A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5V2R  PDB ID: 5V2R 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_A3G4:A26U27_BB-0.583-1.213.4860.3221.86956.689-1.3840.6333.4441.968-0.33956.718
15AA_A5A6:G24G25_BB0.457-0.1452.865-12.7863.22636.907-0.548-1.9952.5544.90719.45139.115
16AA_A6A7:C23G24_BB0.506-1.4633.194-6.686-7.92346.758-1.172-1.1573.289-9.8428.30547.831
17AA_A7C8:A22C23_BB0.922-1.4724.2265.5574.1763.863-1.616-0.564.1923.93-5.23764.2
111AA_A11U12:A18G19_BB1.461-1.2413.5691.2377.74659.278-1.66-1.43.4257.794-1.24459.748
11AA_C1C2:G28G29_BB-0.107-2.0893.2281.4615.04330.697-4.7940.462.8499.439-2.73431.132
12AA_C2A3:U27G28_BB-0.062-1.7453.3030.7117.98227.784-5.1590.2722.70416.201-1.44428.895
18AA_C8G9:A21A22_BB-2.509-1.4194.24211.8622.79953.946-1.7323.5563.5883.042-12.89155.205
14AA_G4A5:G25A26_BB-0.375-0.9444.3523.564-3.803-17.3695.8311.4654.04812.2411.47-18.128
19AA_G9G10:A20A21_BB1.041-0.7913.2147.0216.1330.394-2.567-0.6193.15511.36-13.01231.759
110AA_G10A11:G19A20_BB-0.08-0.8934.027-6.137-2.532-16.5134.691-4.6333.5878.387-20.329-17.789
113AA_G13G14:C16C17_BB-0.138-1.8243.105-2.5515.29330.99-4.249-0.1752.7669.7964.7231.529
112AA_U12G13:C17A18_BB-0.011-1.6213.49-1.37712.70829.819-5.084-0.2162.59923.3892.53432.386

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.