A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5V2R  PDB ID: 5V2R 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U27_B0.2390.027-0.0912.094-8.0190.793
15A_A5:G25_B-7.019-5.5730.793-22.85316.972-21.778
16A_A6:G24_B-6.792-4.1350.01116.3745.496-3.243
17A_A7:C23_B-4.388-0.510.5731.078-0.448-1.503
111A_A11:G19_B-7.014-4.9330.3790.185-17.307-15.798
11A_C1:G29_B0.354-0.0990.102-1.416-7.964-0.267
12A_C2:G28_B0.469-0.1180.034-0.304-6.45-0.269
18A_C8:A22_B4.271-0.578-0.58710.748-19.41110.302
14A_G4:A26_B6.703-4.3-0.34611.905-9.896-5.845
19A_G9:A21_B7.039-5.37-1.112-4.702-0.598-21.594
110A_G10:A20_B6.849-5.904-0.27918.41420.012-22.609
113A_G13:C17_B-0.429-0.119-0.061-4.423-9.903-0.246
114A_G14:C16_B-0.38-0.1110.1822.807-4.337-1.289
112A_U12:A18_B-0.2840.007-0.2541.103-10.992-0.491

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.