A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5V17  PDB ID: 5V17 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_A3U4:A38U39_AA0.04-2.4053.4811.5858.83331.851-5.6740.192.73315.709-2.81933.059
16AA_A12G13:C34U35_AA-0.63-1.6753.406-3.04413.34625.504-6.1240.6322.31827.8226.34628.891
15AA_C5A6:U36G37_AA-0.107-1.2762.673-1.3133.48825.422-3.648-0.0522.4817.8732.96325.689
114AA_C20C22:A26G27_AA0.274-2.7025.89414.41922.02225.957-8.9622.6322.7138.615-25.28236.807
11AA_G1G2:C40C41_AA0.176-1.8483.032-2.917.46627.406-5.198-0.9222.42215.3465.98228.532
12AA_G2A3:U39C40_AA0.322-2.0733.3240.1638.40130.1-5.34-0.5692.66415.793-0.30731.225
17AA_G13G14:C33C34_AA-0.044-1.8293.01-3.2246.61425.624-5.444-0.6242.45614.5357.08526.643
18AA_G14U15:A32C33_AA0.293-1.8823.3013.0394.59631.277-4.2610.0073.0158.442-5.58331.747
110AA_G16U17:A30U31_AA0.112-1.533.255-0.0321.54238.632-2.498-0.1743.1942.330.04838.662
112AA_G18G19:U28C29_AA0.002-2.1793.012-5.88610.04824.113-6.784-1.2191.91422.45313.15326.74
113AA_G19C20:G27U28_AA-0.119-1.7393.23-0.770.76443.579-2.4140.0873.2031.0281.03643.592
14AA_U4C5:G37A38_AA0.032-2.0223.280.10810.37127.225-6.053-0.0422.36621.087-0.2229.099
19AA_U15G16:U31A32_AA-0.297-2.0043.371-7.0089.06524.304-6.514-1.0572.46720.15915.58526.833
111AA_U17G18:C29A30_AA-0.652-1.7413.125-3.5029.70730.12-4.7530.6212.51518.0266.50431.8

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.