A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5V17  PDB ID: 5V17 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U39_A0.002-0.023-0.0250.3-13.2541.828
16A_A6:U36_A0.0570.020.4417.458-2.4662.259
17A_A12:U35_A-0.072-0.019-0.406-0.806-16.2228.794
15A_C5:G37_A0.239-0.0330.288-8.688-1.7861.106
115A_C20:G27_A0.219-0.1170.2715.536-16.403-2.149
116A_C22:A26_A-1.6290.2930.424-1.54433.16926.648
11A_G1:C41_A-0.436-0.118-0.183-6.058-6.871-0.118
12A_G2:C40_A-0.316-0.0880.1262.977-2.863-0.095
18A_G13:C34_A-0.352-0.102-0.173-5.181-6.441-1.005
19A_G14:C33_A-0.393-0.1180.212.469-7.371-0.287
111A_G16:U31_A-2.244-0.4510.393-0.429-15.807-1.472
113A_G18:C29_A-0.425-0.1410.2575.351-15.0960.839
114A_G19:U28_A-2.298-0.4690.3711.994-16.754-1.416
14A_U4:A38_A0.088-0.037-0.085-9.437-15.1660.28
110A_U15:A32_A0.059-0.049-0.3116.435-16.4473.182
112A_U17:A30_A-0.057-0.0090.2913.949-18.4623.522

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.