A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5UEG  PDB ID: 5UEG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_A5:U12_B-0.2760.0170.5513.853-5.564-1.535
16A_A9:U8_B-0.199-0.1250.8795.861-7.192-1.23
17A_A10:U7_B0.5720.1090.2883.071-15.0511.93
13A_C6:G11_B0.0470.0160.3425.515-12.0911.8
110A_C13:G4_B0.041-0.10.419-4.887-8.1480.096
11A_G4:C13_B0.0220.0060.1020.681-8.0741.104
18A_G11:C6_B-0.1870.0140.32-5.709-14.9376.502
14A_U7:A10_B-0.2020.172-0.128-1.472-14.7426.321
15A_U8:A9_B0.124-0.0970.176-4.033-13.247-1.953
19A_U12:A5_B0.1820.0190.767-10.019-9.267-3.49
112C_A5:U12_D-0.213-0.0680.49913.741-3.755-1.793
116C_A9:U8_D-0.224-0.1340.033-3.082-16.604-3.351
117C_A10:U7_D0.3090.1930.3356.672-12.0387.831
113C_C6:G11_D0.206-0.1310.1546.204-14.8911.298
120C_C13:G4_D0.137-0.1750.443-5.86-7.207-1.373
111C_G4:C13_D0.1040.0290.3944.246-6.5770.681
118C_G11:C6_D0.0290.2040.221-5.926-15.2527.376
114C_U7:A10_D-0.5450.0590.14-3.439-9.753-1.862
115C_U8:A9_D0.024-0.3760.764-1.251-3.492-1.429
119C_U12:A5_D-0.0250.0570.775-9.547-10.435-4.517

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.