A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5UEF  PDB ID: 5UEF 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12AA_A5C6:G11U12_BB0.597-1.4793.1594.575.11535.223-3.096-0.352.9748.355-7.46535.864
16AA_A9A10:U7U8_BB-0.524-1.2263.3670.9924.3135.833-2.5910.9863.1886.971-1.60536.096
17AA_A10G11:C6U7_BB0.66-1.7523.1181.8039.45928.476-5.085-0.9492.45918.57-3.53930.029
13AA_C6U7:A10G11_BB-0.707-1.8853.314-3.35111.42827.465-5.8260.7332.42222.7616.67529.89
11AA_G4A5:U12C13_BB0.217-1.2173.0161.240.71132.933-2.256-0.1892.9951.254-2.18632.964
18AA_G11U12:A5C6_BB-0.364-1.4473.345-3.1528.48632.124-3.8950.1242.90114.9675.5633.343
14AA_U7U8:A9A10_BB-0.14-1.3813.28-3.24510.26832.935-3.817-0.2372.7417.5365.54234.604
15AA_U8A9:U8A9_BB0.351-1.6733.0381.9115.16129.572-5.0-0.3531.98627.511-3.46633.208
19AA_U12C13:G4A5_BB-0.028-1.2972.959-1.983-0.57433.976-2.132-0.2392.976-0.9813.3934.037

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.