A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5UEF  PDB ID: 5UEF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_A5:U12_B-0.064-0.1760.4698.207-13.6341.907
16A_A9:U8_B-0.051-0.1830.061-0.612-16.1535.787
17A_A10:U7_B0.352-0.11-0.089-4.927-15.7671.977
13A_C6:G11_B0.235-0.1070.078.24-17.5744.795
110A_C13:G4_B0.166-0.2790.532-0.553-15.031-0.074
11A_G4:C13_B-0.264-0.2010.299-0.36-13.0670.237
18A_G11:C6_B-0.20.0640.219-5.823-12.8974.687
14A_U7:A10_B-0.145-0.1220.1230.928-16.4780.774
15A_U8:A9_B0.18-0.0890.338-1.123-8.9343.958
19A_U12:A5_B0.046-0.0620.484-11.228-9.4513.452

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.