A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5TYX  PDB ID: 5TYX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:DT5_P0.106-0.199-0.184-16.7258.520.646
17T_DA7:DT3_P0.128-0.1740.3212.161-16.2811.215
11T_DC1:DG4_D-0.004-0.320.494-13.45-9.153-2.418
14T_DC4:DG1_D0.372-0.094-0.22812.6250.3590.863
18T_DC8:DG2_P0.351-0.212-0.21611.462-10.8270.31
12T_DG2:DC3_D0.1920.1690.3231.982-10.4394.059
13T_DG3:DC2_D-0.267-0.1680.185-0.819-8.279-2.978
19T_DG9:DC1_P-0.083-0.1830.122-4.048-9.844-1.78
16T_DT6:DA4_P0.063-0.094-0.2079.3443.0072.798

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.