A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5TYW  PDB ID: 5TYW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:DT5_P0.028-0.24-0.232-19.3567.8530.383
17T_DA7:DT3_P0.091-0.1540.35311.06-14.3430.933
11T_DC1:DG4_D-0.108-0.2790.285-9.888-11.063-3.946
14T_DC4:DG1_D0.405-0.075-0.28216.065-0.635-0.276
18T_DC8:DG2_P0.32-0.179-0.22412.046-10.6150.863
12T_DG2:DC3_D0.1310.150.3391.937-14.3183.185
13T_DG3:DC2_D-0.238-0.1990.1880.29-9.218-2.859
19T_DG9:DC1_P-0.097-0.1880.134-3.534-9.606-1.791
16T_DT6:DA4_P-0.063-0.15-0.0657.2212.4743.023

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.