A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5TYV  PDB ID: 5TYV 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14TT_DA5DT6:DA4DT5_PP0.653-0.3282.765-3.34710.19420.481-3.7-2.5762.21926.4548.68523.095
16TT_DA7DC8:DG2DT3_PP-0.505-1.3643.3662.3272.86336.23-2.5841.1343.2154.589-3.7336.411
11TT_DC1DG2:DC3DG4_DD0.0071.3543.4141.6711.61835.9971.9460.2383.4672.615-2.70136.069
17TT_DC8DG9:DC1DG2_PP-0.758-1.3173.522-4.655.55134.692-3.0320.523.3499.1867.69535.417
12TT_DG2DG3:DC2DC3_DD-0.058-0.1613.165-3.1955.20234.497-1.024-0.3683.1028.6885.33535.017
13TT_DG3DC4:DG1DC2_DD0.510.0813.0174.6691.51327.074-0.1760.03.063.199-9.8727.507
15TT_DT6DA7:DT3DA4_PP0.045-1.2143.334-5.742.44527.749-3.035-1.4133.1445.01911.77928.428

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.