A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
Search for released structures

NDB ID: 5TYV  PDB ID: 5TYV 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:DT5_P0.043-0.23-0.199-18.178.1541.669
17T_DA7:DT3_P0.082-0.1420.3689.63-15.7481.449
11T_DC1:DG4_D-0.230.120.388-11.145-18.039-5.776
14T_DC4:DG1_D0.348-0.118-0.21616.753-1.0390.376
18T_DC8:DG2_P0.377-0.205-0.11711.017-11.4490.227
12T_DG2:DC3_D-0.643-0.2710.009-1.237-13.4594.402
13T_DG3:DC2_D-0.279-0.1420.2551.799-10.217-1.732
19T_DG9:DC1_P-0.193-0.1840.11-3.4-10.704-0.202
16T_DT6:DA4_P-0.02-0.203-0.12610.0881.0754.434

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.