A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
Search for released structures

NDB ID: 5TYF  PDB ID: 5TYF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:DT5_P0.132-0.193-0.127-12.8087.9992.027
17T_DA7:DT3_P0.148-0.2120.29610.721-15.2450.782
11T_DC1:DG4_D0.038-0.1230.523-10.834-10.103-4.485
14T_DC4:DG1_D0.319-0.057-0.34215.1290.645-0.287
18T_DC8:DG2_P0.306-0.19-0.13912.145-11.1480.698
12T_DG2:DC3_D0.5920.2220.4814.622-2.2-0.712
13T_DG3:DC2_D-0.246-0.1710.2761.071-7.495-2.687
19T_DG9:DC1_P-0.127-0.1570.166-5.313-10.877-2.438
16T_DT6:DA4_P-0.042-0.052-0.1969.8362.61.414

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.