A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5TYD  PDB ID: 5TYD 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14TT_DA5DT6:DA4DT5_PP0.522-0.5292.855-5.0928.09719.819-3.959-2.9862.26421.94613.80321.986
16TT_DA7DC8:DG2DT3_PP-0.474-1.3413.4172.1952.49935.404-2.5711.1043.2834.098-3.635.554
11TT_DC1DG2:DC3DG4_DD-0.5050.3612.991-2.961-2.11934.3150.910.4312.996-3.5795.034.501
17TT_DC8DG9:DC1DG2_PP-0.769-1.3723.559-5.7166.2136.014-3.0630.3873.3639.8789.09236.958
12TT_DG2DG3:DC2DC3_DD1.086-0.3233.7095.2717.67531.198-2.12-0.8783.65913.888-9.53732.525
13TT_DG3DC4:DG1DC2_DD0.5120.073.0245.7221.55626.536-0.220.2663.0633.337-12.27127.179
15TT_DT6DA7:DT3DA4_PP0.16-1.2133.209-4.1753.3829.258-3.041-1.1493.0016.6218.17829.736

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.