A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5TYD  PDB ID: 5TYD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:DT5_P0.015-0.189-0.261-17.0888.71.552
17T_DA7:DT3_P0.162-0.150.31211.125-15.0430.667
11T_DC1:DG4_D0.479-0.2620.124-7.373-10.617-6.357
14T_DC4:DG1_D0.341-0.087-0.37515.6761.479-1.155
18T_DC8:DG2_P0.293-0.193-0.17811.244-11.117-0.317
12T_DG2:DC3_D1.0550.2010.88111.39-2.456-5.905
13T_DG3:DC2_D-0.182-0.2150.1410.836-8.365-4.018
19T_DG9:DC1_P-0.105-0.1320.127-3.42-10.775-2.214
16T_DT6:DA4_P-0.09-0.0640.0457.71-0.063.14

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.