A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5TWS  PDB ID: 5TWS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:U5_P0.003-0.166-0.023-13.6967.6173.17
17T_DA7:DT3_P0.175-0.1270.30512.853-14.9050.852
11T_DC1:DG4_D0.262-0.2330.305-8.559-11.454-6.553
14T_DC4:DG1_D0.332-0.078-0.33414.7621.285-0.875
18T_DC8:DG2_P0.308-0.166-0.17413.103-12.235-0.034
12T_DG2:DC3_D-0.1350.0110.2621.425-13.6342.909
13T_DG3:DC2_D-0.237-0.2520.153-0.677-8.062-3.042
19T_DG9:DC1_P-0.122-0.0830.051-3.41-10.235-2.238
16T_DT6:DA4_P-0.052-0.079-0.0135.4960.2492.132

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.