A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5T5K  PDB ID: 5T5K 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA2DG4:DC89DA90_JJ-1.5370.2144.7955.79711.00456.65-0.6332.0384.59811.443-6.02857.888
13II_DA5DC7:DG86DT88_JJ0.3642.2855.642-7.456.68978.2161.48-0.6445.7445.2825.88378.752
17II_DA11DC12:DG81DT82_JJ1.225-0.3193.968-6.6312.55238.064-0.851-2.8093.6833.87210.0638.698
127II_DA31DT32:DA61DT62_JJ0.605-0.1272.69-0.2471.00331.153-0.394-1.1642.681.8660.45931.17
130II_DA34DT35:DA58DT59_JJ-0.071-0.1153.332.473-1.8733.5270.1120.5333.318-3.234-4.27633.666
133II_DA37DA38:DT55DT56_JJ-1.3470.0573.346-2.312-4.63440.7250.6021.6613.388-6.6263.30641.039
134II_DA38DT39:DA54DT55_JJ1.3240.4012.86-2.507-8.26834.9991.644-2.4442.603-13.4954.09236.018
137II_DA41DA42:DT51DT52_JJ0.2320.613.256-1.3239.84736.929-0.333-0.5243.29615.212.04338.197
138II_DA42DA43:DT50DT51_JJ0.0880.9712.936-7.0611.28332.8650.025-1.1283.01619.011.88935.389
139II_DA43DG44:DC49DT50_JJ-0.470.3012.961-0.9048.50931.523-0.8250.6912.95115.3131.62632.635
147II_DA51DC52:DG41DT42_JJ0.504-0.5593.06-2.1158.31430.423-2.43-1.2832.77315.4613.93231.582
159II_DA63DT64:DA29DT30_JJ0.1920.3273.0154.2313.56837.9420.0840.1993.0355.452-6.46538.329
166II_DA70DA71:DT22DT23_JJ-0.3790.0193.534-1.5051.21540.096-0.1220.3673.5441.772.19440.141
167II_DA71DC72:DG21DT22_JJ0.327-0.6273.56-3.630.69933.738-1.196-1.193.4941.26.23133.934
175II_DA79DG80:DC13DT14_JJ-0.8150.7563.2723.105-1.78132.5991.6411.9683.139-3.16-5.51132.79
179II_DA83DG84:DC9DT10_JJ0.265-0.1913.056-7.67913.15727.425-2.631-1.8212.54225.41814.83431.301
181II_DA85DT86:DA7DT8_JJ-0.434-0.1982.8570.331-1.13433.578-0.1810.7992.857-1.962-0.57233.598
14II_DC7DG9:DC84DG86_JJ1.1282.2476.291-2.845-22.29173.4983.03-1.0675.488-18.222.32576.391
18II_DC12DT13:DA80DG81_JJ-1.3210.3643.0015.861-1.82437.2570.7712.7122.749-2.832-9.09837.741
112II_DC16DG17:DC76DG77_JJ1.2531.3844.2320.101-2.92839.1142.509-1.8514.125-4.366-0.15139.219
115II_DC19DT20:DA73DG74_JJ-0.7720.1343.721-5.343-0.00632.9670.2340.323.796-0.019.33933.385
118II_DC22DG23:DC70DG71_JJ-1.3971.0183.621-9.65414.46333.979-0.7010.6333.96522.97615.33738.053
121II_DC25DC26:DG67DG68_JJ0.0390.1593.549-5.153-0.32743.3360.249-0.5893.521-0.4426.94843.628
122II_DC26DT27:DA66DG67_JJ0.650.7613.096.935-9.22831.5342.739-0.062.838-16.311-12.25933.53
132II_DC36DA37:DT56DG57_JJ-0.4931.8014.2-9.352-4.66940.4433.154-0.5613.99-6.6213.26241.717
141II_DC45DG46:DC47DG48_JJ-1.293-0.2923.2822.26215.45327.884-3.2652.7552.6529.335-4.29431.883
145II_DC49DT50:DA43DG44_JJ-0.7030.2914.14-8.6132.39732.636-0.003-0.5974.1954.16814.9833.806
148II_DC52DG53:DC40DG41_JJ0.2591.033.245-1.424.98129.9310.949-0.7833.3539.5552.72430.366
151II_DC55DG56:DC37DG38_JJ-0.1860.5283.660.87111.07740.958-0.5590.3593.67115.489-1.21942.375
161II_DC65DG66:DC27DG28_JJ-0.0631.1513.4450.801-1.91334.4752.2480.2363.376-3.225-1.3534.536
163II_DC67DT68:DA25DG26_JJ-0.3641.5733.8460.552-22.13137.1244.4630.5542.554-31.563-0.78743.023
165II_DC69DA70:DT23DG24_JJ-1.4151.0443.647-13.1035.31337.9630.7890.2664.0087.84319.34240.42
168II_DC72DT73:DA20DG21_JJ-0.8850.3533.3784.389-13.88630.3622.8752.2482.805-24.8-7.83933.599
173II_DC77DG78:DC15DG16_JJ0.171.6814.4756.642-1.44942.7622.4720.6554.396-1.972-9.04143.274
177II_DC81DT82:DA11DG12_JJ-0.1370.1392.8492.9910.44138.6170.1630.5262.8330.666-4.51438.731
183II_DC87DT88:DA5DG6_JJ-1.2710.9992.8797.7210.59430.5031.7513.5542.5081.106-14.38631.448
185II_DC89DA90:DT3DG4_JJ-0.2740.634.4822.1773.55334.9340.3130.94.4985.893-3.61135.174
12II_DG4DA5:DT88DC89_JJ0.3440.2633.5323.3694.33833.774-0.298-0.0053.5547.405-5.75234.205
15II_DG9DT10:DA83DC84_JJ-0.457-0.2824.1575.126-13.77135.6231.771.5123.901-21.421-7.97438.444
110II_DG14DT15:DA78DC79_JJ-0.563-0.2383.2770.079-5.77236.0820.4230.9093.273-9.245-0.12736.526
113II_DG17DT18:DA75DC76_JJ-0.6081.1822.2912.7221.09242.6911.5441.0242.2781.497-3.73442.787
117II_DG21DC22:DG71DC72_JJ1.3110.2642.8811.37411.48732.551-1.129-0.5693.07619.096-18.90736.247
119II_DG23DG24:DC69DC70_JJ0.220.0953.820.5395.00137.909-0.591-0.2573.8047.657-0.82538.229
120II_DG24DC25:DG68DC69_JJ-0.1730.263.1565.28212.90128.491-1.8611.2752.92324.45-10.00931.656
126II_DG30DA31:DT62DC63_JJ-0.633-0.263.51411.91513.77925.367-3.1753.5072.52327.333-23.63631.143
140II_DG44DC45:DG48DC49_JJ0.0440.6594.068-3.679-1.96643.0651.132-0.5054.018-2.6714.99843.257
142II_DG46DT47:DA46DC47_JJ0.682-0.1263.493-2.935-8.41835.9451.008-1.4963.372-13.3884.66836.999
149II_DG53DG54:DC39DC40_JJ-1.4540.3713.116-3.07912.00734.236-1.071.9043.17919.6175.03136.347
150II_DG54DC55:DG38DC39_JJ0.8870.3713.8187.522-1.29937.3930.764-0.2233.903-2.001-11.58438.137
152II_DG56DT57:DA36DC37_JJ1.5340.2182.8961.272-0.09431.6860.415-2.5982.953-0.173-2.32831.711
158II_DG62DA63:DT30DC31_JJ-0.1260.0453.8114.24623.97330.96-3.3290.7893.04638.349-6.79239.201
162II_DG66DC67:DG26DC27_JJ0.281-0.2842.93-2.6352.67137.607-0.744-0.7372.8794.134.07537.787
170II_DG74DT75:DA18DC19_JJ-1.052-0.7092.994-0.7283.63736.34-1.5871.5882.9315.8121.16436.522
172II_DG76DC77:DG16DC17_JJ1.0760.6143.0166.105-11.03430.9252.766-0.9382.797-19.696-10.89833.339
174II_DG78DA79:DT14DC15_JJ0.0180.9743.089-5.8821.77741.0811.195-0.623.0952.5158.32541.518
176II_DG80DC81:DG12DC13_JJ0.160.3483.087-6.152-1.47529.9730.932-1.4412.976-2.81211.73130.618
180II_DG84DA85:DT8DC9_JJ-0.4560.1693.3181.114.70139.106-0.3140.813.3026.99-1.65139.392
16II_DT10DA11:DT82DA83_JJ0.50.2063.1276.47315.40232.481-1.7890.0912.96925.538-10.73236.422
19II_DT13DG14:DC79DA80_JJ1.867-0.0083.61.89818.52632.287-2.792-2.6463.23130.369-3.11137.149
111II_DT15DC16:DG77DA78_JJ0.287-0.0553.07910.6336.17731.508-1.0531.1552.95710.871-18.71433.766
114II_DT18DC19:DG74DA75_JJ0.140.8333.7091.087-14.0234.1583.391-0.0613.142-22.712-1.76136.859
116II_DT20DG21:DC72DA73_JJ1.3770.5993.250.006-0.64940.0670.948-2.0093.241-0.948-0.00940.072
123II_DT27DT28:DA65DA66_JJ0.4590.7233.5442.839-1.92236.5761.432-0.3083.527-3.053-4.51236.731
124II_DT28DT29:DA64DA65_JJ0.3190.4523.2522.222-4.43232.8071.527-0.1893.18-7.791-3.90733.169
125II_DT29DG30:DC63DA64_JJ0.1281.7033.737-2.674-10.00553.8042.514-0.3153.385-10.9422.92454.719
128II_DT32DT33:DA60DA61_JJ-0.6470.4483.324-3.28.84234.681-0.5920.5733.37814.5055.2535.896
129II_DT33DA34:DT59DA60_JJ0.176-0.3163.632-0.95922.28833.154-3.293-0.382.8734.6171.4939.785
131II_DT35DC36:DG57DA58_JJ0.8230.0523.1580.82310.60233.247-1.479-1.2533.05117.967-1.39534.86
135II_DT39DT40:DA53DA54_JJ-0.2161.4173.3154.564-14.71233.4874.1030.9192.452-24.017-7.4536.768
136II_DT40DA41:DT52DA53_JJ-0.9040.6593.7310.21618.81734.799-1.6911.3713.60728.992-0.33239.423
143II_DT47DT48:DA45DA46_JJ0.2730.5113.4926.148-11.85737.2842.2260.3593.195-17.86-9.2639.524
144II_DT48DC49:DG44DA45_JJ0.6772.1473.16310.172-11.31342.8473.703-0.0532.631-14.934-13.42845.348
146II_DT50DA51:DT42DA43_JJ0.1190.8393.5151.5512.36440.316-0.2560.0133.61117.442-2.18742.121
153II_DT57DT58:DA35DA36_JJ-2.050.8112.6356.328-5.85535.4341.8943.9232.094-9.448-10.21136.435
154II_DT58DT59:DA34DA35_JJ1.80.8633.603-0.7934.85439.3110.642-2.763.6447.1811.17339.606
155II_DT59DT60:DA33DA34_JJ-0.8420.5263.377-4.372-12.00738.0342.1780.7163.151-17.8196.48940.048
156II_DT60DT61:DA32DA33_JJ1.5611.5082.96510.4516.58840.8321.411-1.0923.4399.192-14.58142.583
157II_DT61DG62:DC31DA32_JJ-0.19-0.0713.908-8.6193.03432.097-0.731-1.3943.8085.35415.20733.34
160II_DT64DC65:DG28DA29_JJ-0.313-0.6493.518-4.44113.43730.14-3.486-0.2292.98324.2328.00933.228
164II_DT68DC69:DG24DA25_JJ1.6690.4162.76212.8613.56237.8220.227-1.0623.1685.297-19.12840.026
169II_DT73DG74:DC19DA20_JJ2.416-0.5213.7654.08231.22833.206-3.858-2.712.64744.242-5.78445.458
171II_DT75DG76:DC17DA18_JJ-0.2280.473.5564.986-1.23440.4860.8210.923.49-1.774-7.1740.797
178II_DT82DA83:DT10DA11_JJ-0.4340.5984.0476.53918.42238.87-1.4821.4013.82825.794-9.15643.338
182II_DT86DC87:DG6DA7_JJ1.710.9962.957.625-4.42237.3722.033-1.713.094-6.786-11.70138.361
184II_DT88DC89:DG4DA5_JJ-0.1560.7454.502-6.142.44946.8350.654-0.4984.5183.0627.6847.273

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.