A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5T5K  PDB ID: 5T5K 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA2:DA90_J-1.7731.141-1.822-1.42-18.81-7.804
13I_DA5:DT88_J-1.012-0.262-0.366-12.744-19.4997.214
17I_DA11:DT82_J-1.695-0.1640.4177.504-17.386-1.27
127I_DA31:DT62_J0.4520.418-0.642-6.467-20.416-1.989
130I_DA34:DT59_J0.21-0.43-0.083-6.367-19.834-2.557
133I_DA37:DT56_J0.048-0.150.257-14.031-15.7214.603
134I_DA38:DT55_J0.2510.2780.167-18.72-25.819-0.821
137I_DA41:DT52_J-0.083-0.525-0.645-3.688-26.0855.653
138I_DA42:DT51_J-0.417-0.017-0.693-6.557-16.399.151
139I_DA43:DT50_J-0.391-0.276-0.1143.967-6.7866.668
147I_DA51:DT42_J-0.139-0.066-0.185-12.707-18.088-2.996
159I_DA63:DT30_J-0.044-0.388-0.017-9.552-10.235-0.043
166I_DA70:DT23_J-0.05-0.090.6097.361-9.989-3.806
167I_DA71:DT22_J0.486-0.2590.635-0.281-23.863-1.112
175I_DA79:DT14_J0.010.366-0.114-20.795-22.1811.282
179I_DA83:DT10_J1.32-0.023-0.733-9.647-13.4130.9
181I_DA85:DT8_J1.060.2820.08-9.457-17.8333.109
186I_DA90:DT3_J-0.392-0.0860.038-43.254-36.28-9.161
14I_DC7:DG86_J0.46-0.0750.4067.869-14.5758.164
18I_DC12:DG81_J-0.550.5011.947-14.285-28.94317.934
112I_DC16:DG77_J-0.2540.002-0.1532.483-31.1383.101
115I_DC19:DG74_J-0.6050.4070.0413.045-29.48210.469
118I_DC22:DG71_J-0.1740.702-0.27113.47-13.87420.529
121I_DC25:DG68_J0.1490.231-0.499-13.766-8.885.086
122I_DC26:DG67_J1.004-0.319-0.03-11.666-0.816-3.997
132I_DC36:DG57_J-0.20.538-0.6420.533-11.85815.379
141I_DC45:DG48_J0.9950.0750.8810.387-36.5513.163
145I_DC49:DG44_J-0.211-0.058-1.09614.016-14.38312.264
148I_DC52:DG41_J-0.8650.5010.106-10.003-18.7674.593
151I_DC55:DG38_J0.306-0.0760.0275.815-18.9145.251
161I_DC65:DG28_J-0.405-0.127-0.142-8.9091.9922.445
163I_DC67:DG26_J-0.019-0.0390.3996.479-13.857.206
165I_DC69:DG24_J-0.090.3-0.82217.772-18.36416.846
168I_DC72:DG21_J0.049-0.1770.555-2.6523.217-0.521
173I_DC77:DG16_J-1.1550.9080.0035.297-6.5877.972
177I_DC81:DG12_J-2.3380.2980.345-11.331-2.926.42
183I_DC87:DG6_J0.0780.27-0.40113.64-17.37718.591
185I_DC89:DG4_J1.094-0.1080.517-2.168-37.71-12.352
12I_DG4:DC89_J0.081-0.3970.2054.18-39.491-1.879
15I_DG9:DC84_J0.188-0.1211.23523.8093.2549.129
110I_DG14:DC79_J0.3230.1840.532-3.539-9.5768.018
113I_DG17:DC76_J-1.0190.439-0.007-20.807-5.86518.299
117I_DG21:DC72_J-0.034-0.0070.6943.335-9.2391.752
119I_DG23:DC70_J0.134-0.0330.2483.538-11.1640.918
120I_DG24:DC69_J0.0680.2630.194-20.134-30.8214.281
126I_DG30:DC63_J1.710.5320.7071.528-24.11218.97
140I_DG44:DC49_J-0.088-0.1660.02517.812-17.5257.337
142I_DG46:DC47_J0.133-0.2020.267-5.317-13.449-11.605
149I_DG53:DC40_J-1.08-0.2360.234-6.246-4.5890.056
150I_DG54:DC39_J-0.977-0.4930.2349.382-11.288-7.079
152I_DG56:DC37_J0.5640.1-0.124-9.329-16.592-4.9
158I_DG62:DC31_J-0.9230.0840.937-5.087-28.623-6.268
162I_DG66:DC27_J-0.6070.5560.107-1.048-17.1376.761
170I_DG74:DC19_J-0.9060.1920.402-13.6892.5917.695
172I_DG76:DC17_J0.8570.2730.6561.797-27.583-3.028
174I_DG78:DC15_J0.080.672-0.01-26.864-54.35422.446
176I_DG80:DC13_J-0.30.185-0.099-13.045-29.6738.147
180I_DG84:DC9_J0.364-0.2170.181-5.124-12.3210.824
16I_DT10:DA83_J0.3660.180.7248.419-18.993-7.989
19I_DT13:DA80_J-0.1870.1130.0559.188-5.165-16.148
111I_DT15:DA78_J0.8070.0330.4213.967-15.613-0.634
114I_DT18:DA75_J0.5190.747-0.33520.803-11.99118.722
116I_DT20:DA73_J-1.0410.2860.494-0.916-22.297-12.521
123I_DT27:DA66_J-0.574-0.226-0.269-1.707-16.4353.66
124I_DT28:DA65_J-0.219-0.015-0.108-1.459-10.1765.675
125I_DT29:DA64_J-1.0430.4140.1923.359-16.45210.643
128I_DT32:DA61_J-0.547-0.298-0.4529.403-14.3865.454
129I_DT33:DA60_J-0.357-0.275-0.24110.485-17.94-7.375
131I_DT35:DA58_J-0.025-0.459-0.534-5.666-18.4554.377
135I_DT39:DA54_J0.5170.2550.1254.1134.83814.194
136I_DT40:DA53_J-0.485-0.219-0.21415.056-12.0296.544
143I_DT47:DA46_J0.2-0.0820.4544.952-16.0610.437
144I_DT48:DA45_J-0.1510.2410.1841.332-29.0478.808
146I_DT50:DA43_J-1.058-0.0240.391-10.367-33.5461.713
153I_DT57:DA36_J-0.2320.0090.1411.219-7.99615.063
154I_DT58:DA35_J-0.7870.249-1.3515.902-39.51-11.523
155I_DT59:DA34_J-0.577-0.0120.228-2.804-30.71615.238
156I_DT60:DA33_J-0.094-0.348-0.5728.309-21.576-12.517
157I_DT61:DA32_J0.752-0.293-0.61519.699-14.5797.544
160I_DT64:DA29_J0.709-0.453-0.7475.132-13.6165.042
164I_DT68:DA25_J-0.902-0.1780.0313.534-11.359-5.567
169I_DT73:DA20_J-0.654-0.1280.1612.46-9.549-19.185
171I_DT75:DA18_J-0.306-0.5410.5362.217-1.148-3.572
178I_DT82:DA11_J-0.445-0.182-0.2487.092-11.631-0.901
182I_DT86:DA7_J0.343-0.202-0.1675.538-9.192-5.885
184I_DT88:DA5_J-0.028-0.059-0.98228.915-49.3316.239

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.