A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
Search for released structures

NDB ID: 5T4W  PDB ID: 5T4W 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15AA_DA5DA6:DT19DT20_BB-0.037-0.023.263-1.23.83936.624-0.551-0.1053.2446.0861.90336.837
16AA_DA6DT7:DA18DT19_BB0.294-0.4783.38-1.935-0.76332.614-0.713-0.8673.367-1.3573.44132.679
110AA_DA10DC11:DG14DT15_BB-0.9440.5743.432-2.707-10.61538.3482.1181.0613.225-15.7714.02139.825
11AA_DC1DG2:DC23DG24_BB-0.4310.1733.352-1.0427.33834.683-0.8290.5513.32912.1381.72435.443
19AA_DC9DA10:DT15DG16_BB0.1971.1792.989-1.9363.38728.1241.676-0.8183.0866.9283.95928.387
111AA_DC11DG12:DC13DG14_BB0.6210.4093.3882.4371.90637.6560.375-0.6313.4352.946-3.76837.778
12AA_DG2DT3:DA22DC23_BB0.5290.4043.4232.161-6.6539.8581.362-0.5123.339-9.664-3.14140.442
14AA_DG4DA5:DT20DC21_BB-0.1690.2713.4080.6323.73537.728-0.0830.3453.4165.758-0.97437.911
13AA_DT3DG4:DC21DA22_BB0.0111.0773.0191.5668.07728.1340.4370.3073.19416.183-3.13729.289
17AA_DT7DT8:DA17DA18_BB0.0830.0433.1994.3661.21737.172-0.0890.4323.1881.9-6.81837.437
18AA_DT8DC9:DG16DA17_BB-0.1490.2123.5580.5862.09940.1180.0480.2893.5623.057-0.85440.174

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.