A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5T4W  PDB ID: 5T4W 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_DA5:DT20_B-0.377-0.131-0.0395.548-15.244.796
16A_DA6:DT19_B0.221-0.098-0.0243.62-22.4074.648
110A_DA10:DT15_B-0.244-0.2280.0655.625-6.504-1.996
11A_DC1:DG24_B0.041-0.0630.171-0.691-12.741-2.457
19A_DC9:DG16_B0.139-0.1810.119-13.829-9.3111.475
111A_DC11:DG14_B-0.1860.0690.365.157-21.749-7.983
12A_DG2:DC23_B-0.024-0.1680.225-0.218-18.318-2.974
14A_DG4:DC21_B-0.421-0.3230.01711.616-5.8663.633
112A_DG12:DC13_B0.107-0.150.256.38-6.152-6.445
13A_DT3:DA22_B0.235-0.2930.066-3.75-8.4391.024
17A_DT7:DA18_B0.1210.0360.304-3.433-22.3769.191
18A_DT8:DA17_B0.227-0.3050.031-4.136-15.9736.583

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.