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As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5T3K  PDB ID: 5T3K 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18AA_A8G10:C26A27_BB-2.173-2.1533.051-0.72611.64432.779-5.0883.5472.22619.8661.23934.74
110AA_C12G13:C23G24_BB-1.081-1.5693.659-7.5368.61330.337-4.4790.4823.27215.77113.79832.376
112AA_C14U15:A21G22_BB0.22-1.2833.237-0.3118.8432.214-3.611-0.4322.79415.5680.54833.376
11AA_G1G2:C33C34_BB0.41-2.0673.1211.3610.68730.777-5.279-0.5282.30919.405-2.46932.565
12AA_G2U3:A32C33_BB-0.535-1.4143.219-3.0884.29331.59-3.310.4323.0437.8165.62232.018
14AA_G4G5:C30C31_BB0.181-1.6673.084-2.7189.28631.049-4.395-0.7372.47116.8414.92932.486
15AA_G5U6:A29C30_BB0.63-1.2123.3526.2977.59634.83-3.029-0.1243.09212.385-10.26736.159
17AA_G7A8:A27C28_BB-0.242-0.7033.1621.3613.47640.052-1.3990.4993.0845.062-1.98240.218
19AA_G10C12:G24C26_BB0.645-2.2565.7056.35722.1365.897-3.325-0.1814.86719.732-5.66969.373
111AA_G13C14:G22C23_BB-0.365-1.3313.231-2.2573.73234.604-2.7710.2763.0926.2433.77634.87
13AA_U3G4:C31A32_BB0.252-1.3593.1811.1928.55733.114-3.559-0.2552.76114.704-2.04934.192
16AA_U6G7:C28A29_BB-0.06-1.6913.134-2.49312.07330.025-4.867-0.2712.29922.1654.57632.403
113AA_U15G16:C20A21_BB0.518-1.4883.0783.3710.28228.063-4.715-0.3952.43720.276-6.64630.038
122CC_C12G13:C23G24_DD-0.853-1.6833.53-1.88911.94827.402-5.7011.2672.63423.8053.76329.906
124CC_C14U15:A21G22_DD0.085-1.5333.3872.0967.4632.882-3.8320.1882.97812.955-3.64133.758
114CC_G1G2:C33C34_DD0.564-1.9873.376-3.22810.13332.708-4.85-1.4282.59717.4295.55134.348
115CC_G2U3:A32C33_DD-0.782-1.6413.0440.8443.63230.3-3.7661.6372.816.916-1.60730.524
117CC_G4G5:C30C31_DD0.59-1.8743.3721.4439.7829.886-5.193-0.8332.66618.343-2.70631.443
118CC_G5U6:A29C30_DD-0.062-1.2983.1932.2587.96232.724-3.4410.4492.79813.856-3.9333.727
120CC_G7G10:C26C28_DD-2.15-2.4586.302-7.43911.76684.678-2.3211.2586.1248.6845.4985.601
121CC_G10C12:G24C26_DD0.279-2.4686.1455.86115.91769.557-3.1050.1245.5513.747-5.06271.341
123CC_G13C14:G22C23_DD0.171-1.6233.017-0.6913.95332.731-3.46-0.4062.8036.9821.22132.969
116CC_U3G4:C31A32_DD0.272-1.3293.316-0.02711.86233.746-3.794-0.4482.7119.6930.04535.713
119CC_U6G7:C28A29_DD0.186-1.3342.906-2.52715.17527.462-4.708-0.7181.90229.2374.86831.404
125CC_U15G16:C20A21_DD0.633-1.3973.2381.68710.436.406-3.407-0.7732.77516.232-2.63337.85

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.