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As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5T3K  PDB ID: 5T3K 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_A8:A27_B2.2141.5790.3650.972-12.9624.148
110A_C12:G24_B0.4870.113-0.4819.982-3.5263.918
112A_C14:G22_B0.353-0.190.076-1.134-16.084.841
11A_G1:C34_B-0.0350.050.012-2.287-11.077-1.026
12A_G2:C33_B-0.378-0.427-0.024-4.28-12.5070.349
14A_G4:C31_B-0.097-0.0460.051-3.595-11.658-1.244
15A_G5:C30_B-0.4820.080.358-2.743-16.8013.008
17A_G7:C28_B-0.707-0.1140.247-7.398-12.940.606
19A_G10:C26_B-0.111-0.1360.015-7.775-15.0553.966
111A_G13:C23_B-0.157-0.222-0.121-1.951-9.4781.573
114A_G16:C20_B-0.364-0.0320.023-3.93-13.3431.806
13A_U3:A32_B-0.163-0.0960.164-3.433-8.158-3.003
16A_U6:A29_B0.112-0.084-0.069-5.302-19.7578.108
113A_U15:A21_B0.128-0.1660.174-4.844-6.7421.286
123C_C12:G24_D0.311-0.069-0.2657.846-9.6625.303
125C_C14:G22_D0.0910.0050.1234.948-17.3511.399
115C_G1:C34_D-0.225-0.288-0.2622.219-14.0290.889
116C_G2:C33_D-0.604-0.1310.025-9.068-16.0594.234
118C_G4:C31_D0.038-0.121-0.151-5.51-10.582-1.573
119C_G5:C30_D-0.257-0.109-0.198-10.746-16.382-0.296
121C_G7:C28_D0.019-0.120.2364.769-4.342-4.935
122C_G10:C26_D-0.504-0.146-0.054-1.22-13.3265.769
124C_G13:C23_D0.013-0.191-0.232-3.362-9.018-2.684
127C_G16:C20_D0.4970.0180.105-8.005-14.2535.504
117C_U3:A32_D-0.4810.097-0.199-2.66-11.869-0.638
120C_U6:A29_D0.032-0.085-0.268-8.713-19.181.29
126C_U15:A21_D0.365-0.020.098-2.308-11.942-0.02

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.