A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5T3K  PDB ID: 5T3K 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
18A_A8:A27_B10
110A_C12:G24_B119
112A_C14:G22_B119
11A_G1:C34_B119
12A_G2:C33_B119
14A_G4:C31_B119
15A_G5:C30_B119
17A_G7:C28_B119
19A_G10:C26_B119
111A_G13:C23_B119
114A_G16:C20_B119
13A_U3:A32_B120
16A_U6:A29_B120
113A_U15:A21_B120
123C_C12:G24_D119
125C_C14:G22_D119
115C_G1:C34_D119
116C_G2:C33_D119
118C_G4:C31_D119
119C_G5:C30_D119
121C_G7:C28_D119
122C_G10:C26_D119
124C_G13:C23_D119
127C_G16:C20_D119
117C_U3:A32_D120
120C_U6:A29_D120
126C_U15:A21_D120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)