A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Sep-2017 number of released structures: 9117
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NDB ID: 5O6U  PDB ID: 5O6U 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_A11A12:DT11DT12_II-0.0640.354.902-4.2340.4420.906-5.355-0.5242.61263.5636.64845.517
14AA_A12A13:DT10DT11_II-0.358-0.0593.4363.25113.25622.693-3.8061.6852.88430.41-7.45826.435
17AA_A17U18:DA5DT6_II-0.182-0.3484.587-10.19429.26530.026-4.555-1.1723.0644.33115.44142.892
12AA_C10A11:DT12DG13_II0.260.7433.642.55329.47420.781-4.0730.0372.74355.459-4.80336.02
15AA_C15U16:DA7DG8_II-2.0980.9363.2810.8516.23937.9870.6313.293.3419.504-1.29638.486
19AA_C28C29:G41G42_AA-0.327-0.9033.102-3.95615.70236.318-2.9890.0642.53723.795.99439.653
110AA_C29G30:C40G41_AA0.839-1.8953.1936.5647.59323.188-6.381-0.1522.5917.855-15.43525.24
112AA_C31C32:G38G39_AA-0.962-2.2123.186-5.74311.90324.063-7.1860.8152.05526.17612.6327.407
113AA_C32G33:A37G38_AA-0.264-0.3942.701-2.50711.1653.755-0.9730.1642.58712.1872.73854.87
11AA_G9C10:DG13DC14_II-0.7030.1543.213-5.0777.54424.139-1.7920.1383.19317.27511.62525.771
111AA_G30C31:G39C40_AA0.278-1.7773.1732.2582.17136.502-3.112-0.1453.0773.458-3.59736.631
16AA_U16A17:DT6DA7_II1.1470.3482.7571.9719.7692.557-7.968-2.4040.8182.331-8.20620.029
18AA_U18A19:DT4DA5_II0.195-0.4973.66224.42429.58820.339-3.8962.3961.52748.656-40.16543.244
114HH_DC2DC4:DG25DG26_II-1.0010.6124.4516.766-9.76951.0291.5521.7294.123-11.167-7.73452.305
115HH_DC4DG5:DC24DG25_II-0.1510.4963.4763.3666.46433.441-0.2540.8283.47711.071-5.76634.204
118HH_DC7DC8:DG21DG22_II0.1690.6873.241-0.1171.74537.6820.838-0.2763.2682.7010.18137.721
119HH_DC8DC9:DG20DG21_II-0.180.3153.598-5.318-0.65935.3730.618-0.5523.58-1.0778.6935.764
120HH_DC9DC10:DG19DG20_II-0.059-0.2513.37-0.935-3.4132.5270.164-0.0623.379-6.0651.66432.713
121HH_DC10DT12:DA17DG19_II-0.237-0.8896.5874.851-2.95567.293-0.5710.596.588-2.662-4.36967.504
116HH_DG5DG6:DC23DC24_II-0.0710.6692.899-4.992-0.49536.6211.114-0.4852.875-0.7837.89936.951
117HH_DG6DC7:DG22DC23_II0.290.7443.6432.566-2.12240.8421.32-0.1043.612-3.035-3.6740.972
122HH_DT12DC13:DG16DA17_II0.6540.2172.8717.571-1.98835.1840.605-0.0932.929-3.239-12.33636.017

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.