A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5GUN  PDB ID: 5GUN 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_DA5DA6:DT19DG20_BB-0.2611.8573.191-2.5494.84162.9471.5590.1373.3194.6262.43663.16
14AA_DA6DT7:DA18DT19_BB0.052-0.1312.808-2.0492.0532.085-0.549-0.4062.7863.73.69732.212
16AA_DA10DA11:DT14DG15_BB-0.221.5863.1470.2663.54156.311.4830.2483.2323.748-0.28256.412
17AA_DA11DC12:DG13DT14_BB0.317-0.5733.213-4.023-2.71131.101-0.558-1.3243.185-5.0177.44631.468
11AA_DG1DT2:DA23DC24_BB-0.516-0.0672.715-7.2416.35223.127-1.763-0.6422.64315.03517.13925.027
12AA_DT2DG3:DA22DA23_BB0.6271.1283.0272.5699.89453.6630.656-0.5353.19710.848-2.81754.557
15AA_DT7DG8:DA17DA18_BB0.7841.4343.0541.4077.54552.841.135-0.7873.2348.428-1.57253.355
113CC_DA29DA30:DT43DG44_DD-0.5671.9763.261-0.5660.62160.831.9210.5333.2840.6140.55960.835
114CC_DA30DT31:DA42DT43_DD0.249-0.0612.809-0.9573.18333.238-0.558-0.5692.7845.5471.66833.399
116CC_DA34DA35:DT38DG39_DD-0.7331.6923.216-1.9925.96454.7121.4720.6733.3926.4652.1655.045
117CC_DA35DC36:DG37DT38_DD-0.206-0.323.025-1.4350.53434.681-0.6130.1423.0260.8952.40634.714
115CC_DT31DG32:DA41DA42_DD0.551.4292.9292.0455.2150.4311.331-0.513.0716.093-2.39150.721
18DD_DA46DA47:DT26DG27_CC-0.9291.1632.802-0.8816.44949.9850.9611.0362.9367.5951.03850.38
19DD_DA47DC48:DG25DT26_CC0.023-0.2462.8264.5066.93425.27-2.0970.9662.63115.335-9.96526.567
110DF_DC48DG61:DC60DG25_EC-0.1721.4583.9910.4771.45-83.325-1.139-0.1153.97-1.0910.358-83.336
120EE_DA53DA54:DT67DG68_FF-0.371.8033.04-2.236-1.44554.7122.040.2783.007-1.5712.43154.772
121EE_DA54DT55:DA66DT67_FF-0.222-0.4792.931-0.366-0.33436.321-0.7270.312.937-0.5360.58736.324
118EE_DG49DT50:DA71DC72_FF-0.81-0.1062.661-0.2338.96722.367-2.5861.882.44422.0130.57224.077
119EE_DT50DG51:DA70DA71_FF0.8411.1552.7591.3295.86954.0990.955-0.852.8796.431-1.45654.408
122EE_DT55DG56:DA65DA66_FF0.771.2923.1021.3060.255.5521.375-0.7543.1220.215-1.40155.567
111FF_DG61DT62:DA59DC60_EE-0.957-0.2712.622-1.7827.94527.19-2.021.6242.516.4393.68628.361
112FF_DT62DG63:DA58DA59_EE1.1511.2112.752.21310.25749.6610.775-1.2072.97412.057-2.60150.688

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.