A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5GUN  PDB ID: 5GUN 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_DA5:DG20_B-6.498-4.5511.089-28.404-16.5646.917
15A_DA6:DT19_B-0.271-0.0580.045-10.7231.6362.639
18A_DA10:DG15_B-6.306-4.4331.059-30.458-15.9225.976
19A_DA11:DT14_B-0.2-0.3720.139-12.6235.7663.094
110A_DC12:DG13_B0.287-0.2970.606-2.2651.238-3.693
11A_DG1:DC24_B-0.0070.081-0.74-19.42112.714.786
13A_DG3:DA22_B6.576-4.3651.26629.833-7.40413.694
17A_DG8:DA17_B6.123-4.0221.22426.493-7.86513.494
12A_DT2:DA23_B0.189-0.2280.12712.612.9963.22
16A_DT7:DA18_B0.7020.0490.2638.0743.1653.651
117C_DA29:DG44_D-6.288-4.0990.975-31.95-11.9779.895
118C_DA30:DT43_D-0.426-0.1470.115-11.716-1.2573.364
121C_DA34:DG39_D-6.347-4.2331.25-30.655-16.06212.698
122C_DA35:DT38_D-1.014-0.2640.074-13.1172.988-0.738
123C_DC36:DG37_D0.223-0.0780.2090.9014.797-4.587
120C_DG32:DA41_D6.355-4.1370.95827.24-4.63813.641
119C_DT31:DA42_D1.0030.0860.25.9543.2016.084
111D_DA46:DG27_C-6.47-4.051.003-35.952-2.0813.932
112D_DA47:DT26_C-0.404-0.3630.066-10.49314.436-0.249
113D_DC48:DG25_C0.092-0.111-0.35216.36311.272-1.564
127E_DA53:DG68_F-6.127-4.0540.745-34.437-11.6362.628
128E_DA54:DT67_F-0.9770.3130.315-11.2950.8131.403
124E_DG49:DC72_F-0.0180.221-0.276-23.247-0.03710.583
126E_DG51:DA70_F6.669-4.3941.01436.487-1.3618.13
130E_DG56:DA65_F6.289-3.8580.90130.67-15.63614.561
125E_DT50:DA71_F0.105-0.0480.07511.32222.8450.398
129E_DT55:DA66_F0.746-0.4630.4158.7474.9351.575
114F_DG61:DC60_E-0.2440.352-0.635-29.9273.75711.399
116F_DG63:DA58_E6.408-3.9111.2432.643-5.67821.13
115F_DT62:DA59_E0.775-0.2030.0736.50622.801-2.74

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.