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As of 21-Feb-2018 number of released structures: 9351
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4462  Download results as an excel file       Gallery view

NDB ID:

5N8L

PDB ID:

5N8L 

Release:

2018-02-21

Title:

Structure of TRBP dsRBD 1 and 2 in complex with a 19 bp siRNA (Complex B)

Classification:

RNA BINDING PROTEIN

Authors:

Masliah, G., Maris, C., Koenig, L.B.S., Yulikov, M., Aeschimann, F., Malinowska, A.L., Mabille, J., Weiler, J., Holla, A., Meisner-Kober, N., Schuler, B., Jeschke, G., Allain, H.T.F.

Citation:

Structural basis of siRNA recognition by TRBP double-stranded RNA binding domains
Embo J. pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

5N8M

PDB ID:

5N8M 

Release:

2018-02-21

Title:

Structure of TRBP dsRBD 1 and 2 in complex with a 19 bp siRNA (Complex A)

Classification:

RNA BINDING PROTEIN

Authors:

Masliah, G., Maris, C., Koenig, L.B.S., Yulikov, M., Aeschimann, F., Malinowska, A.L., Mabille, J., Weiler, J., Holla, A., Meisner-Kober, N., Schuler, B., Jeschke, G., Allain, H.T.F.

Citation:

Structural basis of siRNA recognition by TRBP double-stranded RNA binding domains
Embo J. pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

5UX3

PDB ID:

5UX3 

Release:

2018-02-21

Title:

RNA hairpin structure containing 2-MeImpG monomer analogue and 2-MeImp-oligomer analogue

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.218R free:0.261

NDB ID:

5UZ6

PDB ID:

5UZ6 

Release:

2018-02-21

Title:

RNA hairpin structure containing 2-MeImp-oligo analogue

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.221R free:0.266

NDB ID:

5V0O

PDB ID:

5V0O 

Release:

2018-02-21

Title:

RNA hairpin structure containing 2-MeImpG analogue bound

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.217R free:0.276

NDB ID:

5V9Z

PDB ID:

5V9Z 

Release:

2018-02-21

Title:

RNA hairpin structure containing 2-MeImpG analogue bound

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.51Å R work:0.218R free:0.281

NDB ID:

5VCF

PDB ID:

5VCF 

Release:

2018-02-21

Title:

RNA hairpin structure containing tetraloop/receptor motif, complexed with 2-MeImpG analogue

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.163R free:0.213

NDB ID:

5VCI

PDB ID:

5VCI 

Release:

2018-02-21

Title:

RNA hairpin structure containing tetraloop/receptor motif, complexed with 2-MeImpG analogue

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.162R free:0.212

NDB ID:

5VGW

PDB ID:

5VGW 

Release:

2018-02-21

Title:

RNA hairpin structure containing tetraloop/receptor motif

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.42Å R work:0.207R free:0.212

NDB ID:

5WNP

PDB ID:

5WNP 

Release:

2018-02-21

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Choi, J., Indrisiunaite, G., DeMirci, H., Ieong, K.-W., Wang, J., Petrov, A., Prabhakar, A., Rechavi, G., Dominissini, D., He, C., Ehrenberg, M., Puglisi, J.D.

Citation:

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation
Nat.Struct.Mol.Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.191R free:0.224

NDB ID:

5WNQ

PDB ID:

5WNQ 

Release:

2018-02-21

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Choi, J., Indrisiunaite, G., DeMirci, H., Ieong, K.-W., Wang, J., Petrov, A., Prabhakar, A., Rechavi, G., Dominissini, D., He, C., Ehrenberg, M., Puglisi, J.D.

Citation:

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation
Nat.Struct.Mol.Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.198R free:0.245

NDB ID:

5WNR

PDB ID:

5WNR 

Release:

2018-02-21

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Choi, J., Indrisiunaite, G., DeMirci, H., Ieong, K.-W., Wang, J., Petrov, A., Prabhakar, A., Rechavi, G., Dominissini, D., He, C., Ehrenberg, M., Puglisi, J.D.

Citation:

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation
Nat.Struct.Mol.Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.214R free:0.255

NDB ID:

5WNS

PDB ID:

5WNS 

Release:

2018-02-21

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Choi, J., Indrisiunaite, G., DeMirci, H., Ieong, K.-W., Wang, J., Petrov, A., Prabhakar, A., Rechavi, G., Dominissini, D., He, C., Ehrenberg, M., Puglisi, J.D.

Citation:

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation
Nat.Struct.Mol.Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.219R free:0.255

NDB ID:

5WNT

PDB ID:

5WNT 

Release:

2018-02-21

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Choi, J., Indrisiunaite, G., DeMirci, H., Ieong, K.-W., Wang, J., Petrov, A., Prabhakar, A., Rechavi, G., Dominissini, D., He, C., Ehrenberg, M., Puglisi, J.D.

Citation:

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation
Nat.Struct.Mol.Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.173R free:0.211

NDB ID:

5WNU

PDB ID:

5WNU 

Release:

2018-02-21

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Choi, J., Indrisiunaite, G., DeMirci, H., Ieong, K.-W., Wang, J., Petrov, A., Prabhakar, A., Rechavi, G., Dominissini, D., He, C., Ehrenberg, M., Puglisi, J.D.

Citation:

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation
Nat.Struct.Mol.Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.187R free:0.231

NDB ID:

5WNV

PDB ID:

5WNV 

Release:

2018-02-21

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Choi, J., Indrisiunaite, G., DeMirci, H., Ieong, K.-W., Wang, J., Petrov, A., Prabhakar, A., Rechavi, G., Dominissini, D., He, C., Ehrenberg, M., Puglisi, J.D.

Citation:

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation
Nat.Struct.Mol.Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.179R free:0.202

NDB ID:

6AZ4

PDB ID:

6AZ4 

Release:

2018-02-21

Title:

RNA hairpin complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.98Å R work:0.18R free:0.232

NDB ID:

6BFB

PDB ID:

6BFB 

Release:

2018-02-21

Title:

Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3

Classification:

RNA

Authors:

Rizvi, N.F., Howe, J.A., Nahvi, A., Klein, D.J., Fischmann, T.O., Kim, H.Y., McCoy, M.A., Walker, S.S., Hruza, A., Richards, M.P., Chamberlin, C., Saradjian, P., Butko, M.T., Mercado, G., Burchard, J., Strickland, C., Dandliker, P.J., Smith, G.F., Nickbarg, E.B.

Citation:

Discovery of selective RNA-binding small molecules by affinity-selection mass spectrometry.
ACS Chem. Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.82Å R work:0.202R free:0.243

NDB ID:

6BG9

PDB ID:

6BG9 

Release:

2018-02-21

Title:

HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL

Classification:

RNA

Authors:

Zhang, K., Keane, S.C., Su, Z., Irobalieva, R.N., Chen, M., Van, V., Sciandra, C.A., Marchant, J., Heng, X., Schmid, M.F., Case, D.A., Ludtke, S.J., Summers, M.F., Chiu, W.

Citation:

Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.
Structure pp. - 2018

Experiment:

ELECTRON MICROSCOPY

NDB ID:

6BG9

PDB ID:

6BG9 

Release:

2018-02-21

Title:

HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL

Classification:

RNA

Authors:

Zhang, K., Keane, S.C., Su, Z., Irobalieva, R.N., Chen, M., Van, V., Sciandra, C.A., Marchant, J., Heng, X., Schmid, M.F., Case, D.A., Ludtke, S.J., Summers, M.F., Chiu, W.

Citation:

Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.
Structure pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6BMD

PDB ID:

6BMD 

Release:

2018-02-21

Title:

RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Zhou, L., Oh, S.S., Wang, J., Szostak, J.W.

Citation:

A structural rationale for the enhanced catalysis of nonenzymatic RNA primer extension by a downstream oligonucleotide.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.183R free:0.23

NDB ID:

6C5L

PDB ID:

6C5L 

Release:

2018-02-21

Title:

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Classification:

RIBOSOME

Authors:

Zeng, F., Jin, H.

Citation:

Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination.
Sci Rep 8 pp.2349 - 2349 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.222R free:0.247

NDB ID:

5WIS

PDB ID:

5WIS 

Release:

2018-02-14

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Classification:

RIBOSOME

Authors:

Almutairi, M.M., Svetlov, M.S., Hansen, D.A., Khabibullina, N.F., Klepacki, D., Kang, H.Y., Sherman, D.H., Vazquez-Laslop, N., Polikanov, Y.S., Mankin, A.S.

Citation:

Co-produced natural ketolides methymycin and pikromycin inhibit bacterial growth by preventing synthesis of a limited number of proteins.
Nucleic Acids Res. 45 pp.9573 - 9582 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.703Å R work:0.222R free:0.266

NDB ID:

5WIT

PDB ID:

5WIT 

Release:

2018-02-14

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Classification:

RIBOSOME

Authors:

Almutairi, M.M., Svetlov, M.S., Hansen, D.A., Khabibullina, N.F., Klepacki, D., Kang, H.Y., Sherman, D.H., Vazquez-Laslop, N., Polikanov, Y.S., Mankin, A.S.

Citation:

Co-produced natural ketolides methymycin and pikromycin inhibit bacterial growth by preventing synthesis of a limited number of proteins.
Nucleic Acids Res. 45 pp.9573 - 9582 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.238R free:0.283

NDB ID:

5XN0

PDB ID:

5XN0 

Release:

2018-02-07

Title:

HIV-1 reverse transcriptase Q151M:DNA binary complex

Classification:

TRANSFERASE/DNA

Authors:

Yasutake, Y., Hattori, S.I., Hayashi, H., Matsuda, K., Tamura, N., Kohgo, S., Maeda, K., Mitsuya, H.

Citation:

HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir.
Sci Rep 8 pp.1624 - 1624 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.596Å R work:0.184R free:0.226

NDB ID:

5XN2

PDB ID:

5XN2 

Release:

2018-02-07

Title:

HIV-1 reverse transcriptase Q151M:DNA:dGTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Yasutake, Y., Hattori, S.I., Hayashi, H., Matsuda, K., Tamura, N., Kohgo, S., Maeda, K., Mitsuya, H.

Citation:

HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir.
Sci Rep 8 pp.1624 - 1624 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.381Å R work:0.188R free:0.223

NDB ID:

5XTM

PDB ID:

5XTM 

Release:

2018-02-07

Title:

Crystal structure of PhoRpp38 bound to a K-turn in P12.2 helix

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Oshima, K., Gao, X., Hayashi, S., Ueda, T., Nakashima, T., Kimura, M.

Citation:

Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif.
Acta Crystallogr F Struct Biol Commun 74 pp.57 - 64 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.196R free:0.222

NDB ID:

5Y7M

PDB ID:

5Y7M 

Release:

2018-02-07

Title:

Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix

Classification:

RNA BINDING PROTEIN

Authors:

Oshima, K., Gao, X., Hayashi, S., Ueda, T., Nakashima, T., Kimura, M.

Citation:

Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif.
Acta Crystallogr F Struct Biol Commun 74 pp.57 - 64 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.224R free:0.247

NDB ID:

6B4V

PDB ID:

6B4V 

Release:

2018-02-07

Title:

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Svidritskiy, E., Korostelev, A.A.

Citation:

Mechanism of Inhibition of Translation Termination by Blasticidin S.
J. Mol. Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å

NDB ID:

6C2L

PDB ID:

6C2L 

Release:

2018-01-31

Title:

Bacteriophage N4 RNA polymerase II elongation complex 1

Classification:

transcription/dna/rna

Authors:

Molodtsov, V., Murakami, K.S.

Citation:

TBA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.189R free:0.244

NDB ID:

6C2P

PDB ID:

6C2P 

Release:

2018-01-31

Title:

Bacteriophage N4 RNA polymerase II elongation complex 2

Classification:

transcription/dna/rna

Authors:

Molodtsov, V., Murakami, K.S.

Citation:

TBA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.19R free:0.221

NDB ID:

5XMA

PDB ID:

5XMA 

Release:

2018-01-24

Title:

Crystal structure of AsfvPolX in complex with DNA enzyme at P43212 space group

Classification:

TRANSFERASE/DNA

Authors:

Liu, H., Yu, X., Chen, Y., Zhang, J., Wu, B., Zheng, L., Haruehanroengra, P., Wang, R., Li, S., Lin, J., Li, J., Sheng, J., Huang, Z., Ma, J., Gan, J.

Citation:

Crystal structure of an RNA-cleaving DNAzyme.
Nat Commun 8 pp.2006 - 2006 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.8Å R work:0.258R free:0.285

NDB ID:

5MRX

PDB ID:

5MRX 

Release:

2018-01-17

Title:

27-nt SRL with a 5-hydroxymethyl cytidine modification

Classification:

RNA

Authors:

Ennifar, E., Micura, R.

Citation:

Xray structure of 5hmrc-modified RNA at atomic resolution
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:0.851Å R work:0.145R free:0.168

NDB ID:

5WWE

PDB ID:

5WWE 

Release:

2018-01-17

Title:

Crystal structure of hnRNPA2B1 in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B., Su, S., Patil, D.P., Liu, H., Gan, J., Jaffrey, S.R., Ma, J.

Citation:

Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1.
Nat Commun 9 pp.420 - 420 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.224R free:0.274

NDB ID:

5WWF

PDB ID:

5WWF 

Release:

2018-01-17

Title:

Crystal structure of hnRNPA2B1 in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B., Su, S., Patil, D.P., Liu, H., Gan, J., Jaffrey, S.R., Ma, J.

Citation:

Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1.
Nat Commun 9 pp.420 - 420 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.202R free:0.257

NDB ID:

5WWG

PDB ID:

5WWG 

Release:

2018-01-17

Title:

Crystal structure of hnRNPA2B1 in complex with AAGGACUUGC

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B., Su, S., Patil, D.P., Liu, H., Gan, J., Jaffrey, S.R., Ma, J.

Citation:

Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1.
Nat Commun 9 pp.420 - 420 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.03Å R work:0.198R free:0.256

NDB ID:

6F3H

PDB ID:

6F3H 

Release:

2018-01-17

Title:

Crystal structure of Dss1 exoribonuclease active site mutant D477N from Candida glabrata

Classification:

HYDROLASE

Authors:

Razew, M., Warkocki, Z., Taube, M., Kolondra, A., Czarnocki-Cieciura, M., Nowak, E., Labedzka-Dmoch, K., Kawinska, A., Piatkowski, J., Golik, P., Kozak, M., Dziembowski, A., Nowotny, M.

Citation:

Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components.
Nat Commun 9 pp.97 - 97 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.703Å R work:0.195R free:0.24

NDB ID:

6F4A

PDB ID:

6F4A 

Release:

2018-01-17

Title:

Yeast mitochondrial RNA degradosome complex mtEXO

Classification:

HYDROLASE

Authors:

Razew, M., Warkocki, Z., Taube, M., Kolondra, A., Czarnocki-Cieciura, M., Nowak, E., Labedzka-Dmoch, K., Kawinska, A., Piatkowski, J., Golik, P., Kozak, M., Dziembowski, A., Nowotny, M.

Citation:

Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components.
Nat Commun 9 pp.97 - 97 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.55Å R work:0.296R free:0.327

NDB ID:

6BBO

PDB ID:

6BBO 

Release:

2018-01-10

Title:

Crystal structure of human APOBEC3H/RNA complex

Classification:

HYDROLASE/RNA

Authors:

Shaban, N.M., Shi, K., Lauer, K.V., Carpenter, M.A., Richards, C.M., Salamango, D., Wang, J., Lopresti, M.W., Banerjee, S., Levin-Klein, R., Brown, W.L., Aihara, H., Harris, R.S.

Citation:

The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by an RNA-Mediated Dimerization Mechanism.
Mol. Cell 69 pp.75 - 86.e9 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.428Å R work:0.363R free:0.392

NDB ID:

6BSG

PDB ID:

6BSG 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with RNA/DNA hybrid in an RNA hydrolysis-off mode

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.44Å R work:0.19R free:0.224

NDB ID:

6BSH

PDB ID:

6BSH 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with RNA/DNA hybrid in the RNA hydrolysis mode

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.649Å R work:0.189R free:0.227

NDB ID:

6BSI

PDB ID:

6BSI 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with an RNA/DNA hybrid containing the polypurine-tract sequence

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.192R free:0.24

NDB ID:

6BSJ

PDB ID:

6BSJ 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with an RNA/DNA hybrid sequence non-preferred for RNA hydrolysis

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.89Å R work:0.2R free:0.25

NDB ID:

6EZ0

PDB ID:

6EZ0 

Release:

2018-01-03

Title:

Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding

Classification:

RNA

Authors:

Erat, M.C., Besic, E., Oberhuber, M., Johannsen, S., Sigel, R.K.O.

Citation:

Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding.
J. Biol. Inorg. Chem. 23 pp.167 - 177 2018

Experiment:

SOLUTION NMR

NDB ID:

5Y6Z

PDB ID:

5Y6Z 

Release:

2017-12-27

Title:

Crystal structure of the coxsackievirus A16 polymerase elongation complex

Classification:

TRANSFERASE/RNA

Authors:

Bi, P., Shu, B., Gong, P.

Citation:

Crystal structure of the coxsackievirus A16 RNA-dependent RNA polymerase elongation complex reveals novel features in motif A dynamics
Virol Sin 32 pp.548 - 552 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.218R free:0.259

NDB ID:

6B14

PDB ID:

6B14 

Release:

2017-12-27

Title:

Crystal structure of Spinach RNA aptamer in complex with Fab BL3-6S97N

Classification:

immune system/rna

Authors:

Koirala, D., Shelke, S.A., Dupont, M., Ruiz, S., DasGupta, S., Bailey, L.J., Benner, S.A., Piccirilli, J.A.

Citation:

Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.64Å R work:0.212R free:0.226

NDB ID:

6B3K

PDB ID:

6B3K 

Release:

2017-12-27

Title:

Crystal structure of mutant Spinach RNA aptamer in complex with Fab BL3-6

Classification:

immune system/rna

Authors:

Koirala, D., Shelke, S.A., Dupont, M., Ruiz, S., DasGupta, S., Bailey, L.J., Benner, S.A., Piccirilli, J.A.

Citation:

Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.192R free:0.225

NDB ID:

5ML7

PDB ID:

5ML7 

Release:

2017-12-20

Title:

CRYSTAL STRUCTURE OF L1-STALK FRAGMENT OF 23S rRNA FROM HALOARCULA MARISMORTUI

Classification:

RNA

Authors:

Gabdulkhakov, A.G., Tishchenko, T.V., Nevskaya, N.A., Nikonov, S.V.

Citation:

CRYSTAL STRUCTURE OF L1-STALK FRAGMENT OF 23S rRNA FROM HALOARCULA MARISMORTUI
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.226R free:0.291

NDB ID:

5NS3

PDB ID:

5NS3 

Release:

2017-12-20

Title:

Crystal structures of Cy5 cyanine fluorophores stacked onto the end of double-stranded RNA

Classification:

RNA

Authors:

Liu, Y., Lilley, D.M.J.

Citation:

Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA.
Biophys. J. 113 pp.2336 - 2343 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.251R free:0.274

NDB ID:

5NS4

PDB ID:

5NS4 

Release:

2017-12-20

Title:

Crystal structures of Cy3 cyanine fluorophores stacked onto the end of double-stranded RNA

Classification:

RNA BINDING PROTEIN

Authors:

Liu, Y., Lilley, D.M.J.

Citation:

Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA.
Biophys. J. 113 pp.2336 - 2343 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.259R free:0.282