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As of 13-Dec-2017 number of released structures: 9265
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3426  Download results as an excel file       Gallery view

NDB ID:

5NDG

PDB ID:

5NDG 

Release:

2017-12-13

Title:

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J., Urzhumtsev, A., Ferguson, A., Chang, T., Yusupov, M., Blanchard, S.C., Yusupova, G., Yusupov, M.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.209R free:0.252

NDB ID:

5NDK

PDB ID:

5NDK 

Release:

2017-12-13

Title:

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J., Urzhumtsev, A., Ferguson, A., Chang, T., Yusupov, M., Blanchard, S.C., Yusupova, G., Yusupov, M.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.212R free:0.253

NDB ID:

5NDV

PDB ID:

5NDV 

Release:

2017-12-13

Title:

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J., Urzhumtsev, A., Ferguson, A., Chang, T., Yusupov, M., Blanchard, S.C., Yusupova, G., Yusupov, M.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.202R free:0.25

NDB ID:

5NDW

PDB ID:

5NDW 

Release:

2017-12-13

Title:

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J., Urzhumtsev, A., Ferguson, A., Chang, T., Yusupov, M., Blanchard, S.C., Yusupova, G., Yusupov, M.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.191R free:0.234

NDB ID:

5OBM

PDB ID:

5OBM 

Release:

2017-12-13

Title:

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J., Urzhumtsev, A., Ferguson, A., Chang, T., Yusupov, M., Blanchard, S.C., Yusupova, G., Yusupov, M.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.188R free:0.237

NDB ID:

5WT1

PDB ID:

5WT1 

Release:

2017-12-13

Title:

Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA

Classification:

TRANSFERASE/RNA

Authors:

Wang, C., Jia, Q., Zeng, J., Chen, R., Xie, W.

Citation:

Structural insight into the methyltransfer mechanism of the bifunctional Trm5
Sci Adv 3 pp.e1700195 - e1700195 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.598Å R work:0.247R free:0.274

NDB ID:

5WT3

PDB ID:

5WT3 

Release:

2017-12-13

Title:

Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA

Classification:

TRANSFERASE/RNA

Authors:

Wang, C., Jia, Q., Zeng, J., Chen, R., Xie, W.

Citation:

Structural insight into the methyltransfer mechanism of the bifunctional Trm5
Sci Adv 3 pp.e1700195 - e1700195 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.204Å R work:0.246R free:0.256

NDB ID:

5X3Z

PDB ID:

5X3Z 

Release:

2017-12-13

Title:

Solution structure of musashi1 RBD2 in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Iwaoka, R., Nagata, T., Tsuda, K., Imai, T., Okano, H., Kobayashi, N., Katahira, M.

Citation:

Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA
Molecules 22 pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

6EVJ

PDB ID:

6EVJ 

Release:

2017-12-13

Title:

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter and capped RNA primer

Classification:

VIRAL PROTEIN

Authors:

Pflug, A., Gaudon, S., Resa-Infante, P., Lethier, M., Reich, S., Schulze, W.M., Cusack, S.

Citation:

Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.9Å R work:0.206R free:0.245

NDB ID:

6EVK

PDB ID:

6EVK 

Release:

2017-12-13

Title:

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter and cap analogue m7GTP

Classification:

VIRAL PROTEIN

Authors:

Pflug, A., Gaudon, S., Resa-Infante, P., Lethier, M., Reich, S., Schulze, W.M., Cusack, S.

Citation:

Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.233R free:0.272

NDB ID:

5WS2

PDB ID:

5WS2 

Release:

2017-12-06

Title:

Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA

Classification:

HYDROLASE

Authors:

Zheng, X., Feng, N., Li, D., Dong, X., Li, J.

Citation:

New molecular insights into an archaeal RNase J reveal a conserved processive exoribonucleolysis mechanism of the RNase J family
Mol. Microbiol. 106 pp.351 - 366 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.398Å R work:0.173R free:0.208

NDB ID:

5X6B

PDB ID:

5X6B 

Release:

2017-12-06

Title:

Crystal structure of SepCysE-SepCysS in complex with tRNACys from Methanocaldococcus jannaschii

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chen, M., Kato, K., Kubo, Y., Tanaka, Y., Liu, Y., Long, F., Whitman, W.B., Lill, P., Gatsogiannis, C., Raunser, S., Shimizu, N., Shinoda, A., Nakamura, A., Tanaka, I., Yao, M.

Citation:

Structural basis for tRNA-dependent cysteine biosynthesis
Nat Commun 8 pp.1521 - 1521 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.596Å R work:0.224R free:0.261

NDB ID:

6BGB

PDB ID:

6BGB 

Release:

2017-12-06

Title:

Crystal Structure of the 16mer GCAGNCUUAAGUCUGC containing BrPh 7-triazolyl-8-aza-7-deazaadenosine

Classification:

RNA

Authors:

Suter, S.R., Ball-Jones, A., Mumbleau, M.M., Valenzuela, R., Ibarra-Soza, J., Owens, H., Fisher, A.J., Beal, P.A.

Citation:

Controlling miRNA-like off-target effects of an siRNA with nucleobase modifications.
Org. Biomol. Chem. 15 pp.10029 - 10036 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.216R free:0.255

NDB ID:

5NXT

PDB ID:

5NXT 

Release:

2017-11-29

Title:

Wobble base paired RNA double helix

Classification:

RNA

Authors:

Garg, A., Heinemann, U.

Citation:

A Novel Form of RNA Double Helix Based on G·U and C·A+ Wobble Base Pairing.
RNA pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.379Å R work:0.129R free:0.151

NDB ID:

5U0Q

PDB ID:

5U0Q 

Release:

2017-11-29

Title:

RNA-DNA heptamer duplex with one 2'-5'-linkage

Classification:

RNA, DNA

Authors:

Luo, Z., Sheng, J., Wang, R.

Citation:

RNA-DNA heptamer duplex with one 2'-5'-linkage
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.43Å R work:0.152R free:0.176

NDB ID:

6AR1

PDB ID:

6AR1 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Nat))

Classification:

RNA binding protein/RNA/DNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.01Å R work:0.216R free:0.254

NDB ID:

6AR3

PDB ID:

6AR3 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Se-Met))

Classification:

RNA binding protein/RNA/DNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.41Å R work:0.273R free:0.323

NDB ID:

6AR5

PDB ID:

6AR5 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (Duplex Only)

Classification:

DNA/RNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.413Å R work:0.185R free:0.212

NDB ID:

5WEA

PDB ID:

5WEA 

Release:

2017-11-22

Title:

Human Argonaute2 Helix-7 Mutant

Classification:

HYDROLASE/RNA

Authors:

Klum, S.M., Chandradoss, S.D., Schirle, N.T., Joo, C., MacRae, I.J.

Citation:

Helix-7 in Argonaute2 shapes the microRNA seed region for rapid target recognition.
EMBO J. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.12Å R work:0.252R free:0.282

NDB ID:

5Y85

PDB ID:

5Y85 

Release:

2017-11-22

Title:

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Classification:

RNA

Authors:

Zheng, L., Mairhofer, E., Teplova, M., Zhang, Y., Ma, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun 8 pp.1180 - 1180 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.001Å R work:0.217R free:0.237

NDB ID:

5Y87

PDB ID:

5Y87 

Release:

2017-11-22

Title:

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Classification:

RNA

Authors:

Zheng, L., Mairhofer, E., Teplova, M., Zhang, Y., Ma, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun 8 pp.1180 - 1180 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.132Å R work:0.202R free:0.257

NDB ID:

5OMW

PDB ID:

5OMW 

Release:

2017-11-15

Title:

Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation

Classification:

TRANSLATION

Authors:

Dulic, M., Cvetesic, N., Zivkovic, I., Palencia, A., Cusack, S., Bertosa, B., Gruic-Sovulj, I.

Citation:

Kinetic origin of substrate specificity in post-transfer editing by leucyl-tRNA synthetase.
J. Mol. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.218R free:0.264

NDB ID:

5ON2

PDB ID:

5ON2 

Release:

2017-11-15

Title:

Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation

Classification:

TRANSLATION

Authors:

Dulic, M., Cvetesic, N., Zivkovic, I., Palencia, A., Cusack, S., Bertosa, B., Gruic-Sovulj, I.

Citation:

Kinetic origin of substrate specificity in post-transfer editing by leucyl-tRNA synthetase.
J. Mol. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.263

NDB ID:

5ON3

PDB ID:

5ON3 

Release:

2017-11-15

Title:

Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation

Classification:

LIGASE

Authors:

Dulic, M., Cvetesic, N., Zivkovic, I., Palencia, A., Cusack, S., Bertosa, B., Gruic-Sovulj, I.

Citation:

Kinetic origin of substrate specificity in post-transfer editing by leucyl-tRNA synthetase.
J. Mol. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.241R free:0.277

NDB ID:

5ONH

PDB ID:

5ONH 

Release:

2017-11-15

Title:

Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation

Classification:

LIGASE

Authors:

Dulic, M., Cvetesic, N., Zivkovic, I., Palencia, A., Cusack, S., Bertosa, B., Gruic-Sovulj, I.

Citation:

Kinetic origin of substrate specificity in post-transfer editing by leucyl-tRNA synthetase.
J. Mol. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.222R free:0.257

NDB ID:

5XC6

PDB ID:

5XC6 

Release:

2017-11-08

Title:

Dengue Virus 4 NS3 Helicase in complex with SSRNA SLA12

Classification:

HYDROLASE/RNA

Authors:

Swarbrick, C.M.D., Basavannacharya, C., Chan, K.W.K., Chan, S.A., Singh, D., Wei, N., Phoo, W.W., Luo, D., Lescar, J., Vasudevan, S.G.

Citation:

NS3 helicase from dengue virus specifically recognizes viral RNA sequence to ensure optimal replication
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.201R free:0.256

NDB ID:

5OT2

PDB ID:

5OT2 

Release:

2017-11-01

Title:

RNA polymerase II elongation complex in the presence of 3d-Napht-A

Classification:

TRANSCRIPTION

Authors:

Malvezzi, S., Farnung, L., Aloisi, C.M.N., Angelov, T., Cramer, P., Sturla, S.J.

Citation:

Mechanism of RNA polymerase II stalling by DNA alkylation.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.12172 - 12177 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.178R free:0.221

NDB ID:

5WTI

PDB ID:

5WTI 

Release:

2017-11-01

Title:

Crystal structure of the CRISPR-associated protein in complex with crRNA and DNA

Classification:

Hydrolase/DNA/RNA

Authors:

Wu, D., Guan, X., Zhu, Y., Ren, K., Huang, Z.

Citation:

Structural basis of stringent PAM recognition by CRISPR-C2c1 in complex with sgRNA
Cell Res. 27 pp.705 - 708 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.682Å R work:0.216R free:0.264

NDB ID:

5XJ2

PDB ID:

5XJ2 

Release:

2017-11-01

Title:

Structure of spRlmCD with U747 RNA

Classification:

TRANSFERASE/RNA

Authors:

Jiang, Y., Li, F., Wu, J., Shi, Y., Gong, Q.

Citation:

Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD
PLoS ONE 12 pp.e0185226 - e0185226 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.84Å R work:0.195R free:0.236

NDB ID:

5O58

PDB ID:

5O58 

Release:

2017-10-25

Title:

Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with substrate 5'-pApG

Classification:

HYDROLASE

Authors:

Drexler, D.J., Muller, M., Rojas-Cordova, C.A., Bandera, A.M., Witte, G.

Citation:

Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.
Structure 25 pp.1887 - 1897.e4 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.157R free:0.183

NDB ID:

5W3V

PDB ID:

5W3V 

Release:

2017-10-25

Title:

Crystal Structure of macaque APOBEC3H in complex with RNA

Classification:

ANTIVIRAL PROTEIN/RNA

Authors:

Bohn, J.A., Thummar, K., York, A., Raymond, A., Brown, W.C., Bieniasz, P.D., Hatziioannou, T., Smith, J.L.

Citation:

APOBEC3H structure reveals an unusual mechanism of interaction with duplex RNA.
Nat Commun 8 pp.1021 - 1021 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.243Å R work:0.181R free:0.221

NDB ID:

6B0B

PDB ID:

6B0B 

Release:

2017-10-25

Title:

Crystal structure of human APOBEC3H

Classification:

HYDROLASE/RNA

Authors:

Harris, R., Shaban, N.M., Shi, K., Lauer, K., Carpenter, M., Richards, C., Lopresti, M., Scalamango, D., Wang, J., Banerjee, S., Brown, W., Aihara, H., Harris, R.S.

Citation:

The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by a RNA-Mediated Dimerization Mechanism
Biorxiv pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.28006Å R work:0.352R free:0.362

NDB ID:

5NWQ

PDB ID:

5NWQ 

Release:

2017-10-18

Title:

The structure of the thermobifida fusca guanidine III riboswitch with guanidine.

Classification:

RNA

Authors:

Huang, L., Wang, J., Wilson, T.J., Lilley, D.M.J.

Citation:

Structure of the Guanidine III Riboswitch.
Cell Chem Biol 24 pp.1407 - 1415.e2 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.91Å R work:0.204R free:0.222

NDB ID:

5NY8

PDB ID:

5NY8 

Release:

2017-10-18

Title:

The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine

Classification:

RNA

Authors:

Huang, L., Wang, J., Wilson, T.J., Lilley, D.M.J.

Citation:

Structure of the Guanidine III Riboswitch.
Cell Chem Biol 24 pp.1407 - 1415.e2 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.04Å R work:0.188R free:0.225

NDB ID:

5NZ3

PDB ID:

5NZ3 

Release:

2017-10-18

Title:

The structure of the thermobifida fusca guanidine III riboswitch with methylguanidine

Classification:

RNA

Authors:

Huang, L., Wang, J., Wilson, T.J., Lilley, D.M.J.

Citation:

Structure of the Guanidine III Riboswitch.
Cell Chem Biol 24 pp.1407 - 1415.e2 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.059Å R work:0.218R free:0.273

NDB ID:

5NZ6

PDB ID:

5NZ6 

Release:

2017-10-18

Title:

The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.

Classification:

RNA

Authors:

Huang, L., Wang, J., Wilson, T.J., Lilley, D.M.J.

Citation:

Structure of the Guanidine III Riboswitch.
Cell Chem Biol 24 pp.1407 - 1415.e2 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.94Å R work:0.191R free:0.216

NDB ID:

5NZD

PDB ID:

5NZD 

Release:

2017-10-18

Title:

The structure of the thermobifida fusca guanidine III riboswitch in space group P212121.

Classification:

RNA

Authors:

Huang, L., Wang, J., Wilson, T.J., Lilley, D.M.J.

Citation:

Structure of the Guanidine III Riboswitch.
Cell Chem Biol 24 pp.1407 - 1415.e2 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.007Å R work:0.219R free:0.245

NDB ID:

5O62

PDB ID:

5O62 

Release:

2017-10-18

Title:

The structure of the thermobifida fusca guanidine III riboswitch with 1-Ethylguanidine.

Classification:

RNA

Authors:

Huang, L., Wang, J., Wilson, T.J., Lilley, D.M.J.

Citation:

Structure of the Guanidine III Riboswitch.
Cell Chem Biol 24 pp.1407 - 1415.e2 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.119Å R work:0.207R free:0.255

NDB ID:

5O69

PDB ID:

5O69 

Release:

2017-10-18

Title:

The structure of the thermobifida fusca guanidine III riboswitch with agmatine.

Classification:

RNA

Authors:

Huang, L., Wang, J., Wilson, T.J., Lilley, D.M.J.

Citation:

Structure of the Guanidine III Riboswitch.
Cell Chem Biol 24 pp.1407 - 1415.e2 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.319Å R work:0.242R free:0.27

NDB ID:

5OLA

PDB ID:

5OLA 

Release:

2017-10-18

Title:

Structure of mitochondrial transcription elongation complex in complex with elongation factor TEFM

Classification:

TRANSCRIPTION

Authors:

Hillen, H.S., Parshin, A.V., Agaronyan, K., Morozov, Y.I., Graber, J.J., Chernev, A., Schwinghammer, K., Urlaub, H., Anikin, M., Cramer, P., Temiakov, D.

Citation:

Mechanism of Transcription Anti-termination in Human Mitochondria.
Cell 171 pp.1082 - 1093.e13 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.904Å R work:0.242R free:0.275

NDB ID:

5TGP

PDB ID:

5TGP 

Release:

2017-10-18

Title:

DNA 8mer containing two 2SeT modifications

Classification:

DNA

Authors:

Zhang, W., Huang, Z.

Citation:

DNA 8mer containing two 2SeT modifications
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.188R free:0.208

NDB ID:

5VM9

PDB ID:

5VM9 

Release:

2017-10-18

Title:

Human Argonaute3 bound to guide RNA

Classification:

Hydrolase/RNA

Authors:

Park, M.S., Phan, H.D., Busch, F., Hinckley, S.H., Brackbill, J.A., Wysocki, V.H., Nakanishi, K.

Citation:

Human Argonaute3 has slicer activity.
Nucleic Acids Res. 45 pp.11867 - 11877 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.28Å R work:0.187R free:0.239

NDB ID:

5M8I

PDB ID:

5M8I 

Release:

2017-10-11

Title:

Solution structure of CUG-BP2 RRM3 in complex with 5'-UUUAA-3' RNA

Classification:

RNA BINDING PROTEIN

Authors:

Diarra Dit Konte, N., Krepl, M., Damberger, F.F., Ripin, N., Duss, O., Sponer, J., Allain, F.H.

Citation:

Aromatic side-chain conformational switch on the surface of the RNA Recognition Motif enables RNA discrimination.
Nat Commun 8 pp.654 - 654 2017

Experiment:

SOLUTION NMR

NDB ID:

5TKO

PDB ID:

5TKO 

Release:

2017-10-11

Title:

RNA heptamer duplex with one 2'-5'-linkage

Classification:

RNA

Authors:

Luo, Z., Sheng, J., Wang, R.

Citation:

RNA heptamer duplex with one 2'-5'-linkage
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.52Å R work:0.144R free:0.177

NDB ID:

5UD5

PDB ID:

5UD5 

Release:

2017-10-11

Title:

Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase bound to tRNA(Pyl)

Classification:

LIGASE/RNA

Authors:

Suzuki, T., Miller, C., Guo, L.T., Ho, J.M.L., Bryson, D.I., Wang, Y.S., Liu, D.R., Soll, D.

Citation:

Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase.
Nat. Chem. Biol. 13 pp.1261 - 1266 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.347Å R work:0.216R free:0.242

NDB ID:

5V6X

PDB ID:

5V6X 

Release:

2017-10-11

Title:

Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase mutant (32A NTD) bound to tRNA(Pyl)

Classification:

LIGASE/RNA

Authors:

Suzuki, T., Miller, C., Guo, L.T., Ho, J.M.L., Bryson, D.I., Wang, Y.S., Liu, D.R., Soll, D.

Citation:

Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase.
Nat. Chem. Biol. 13 pp.1261 - 1266 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.76Å R work:0.206R free:0.248

NDB ID:

5XWG

PDB ID:

5XWG 

Release:

2017-10-11

Title:

Crystal structure of a novel RNA motif that allows for precise positioning of a metal ion

Classification:

RNA

Authors:

Kanazawa, H., Kondo, J.

Citation:

Crystal structure of a novel RNA motif that allows for precise positioning of a single metal ion.
J. Inorg. Biochem. 176 pp.140 - 143 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.002Å R work:0.216R free:0.225

NDB ID:

5NEW

PDB ID:

5NEW 

Release:

2017-10-04

Title:

RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer

Classification:

RNA

Authors:

Schulz, E.C., Seiler, M., Zuliani, C., Voigt, F., Rybin, V., Pogenberg, V., Mucke, N., Wilmanns, M., Gibson, T.J., Barabas, O.

Citation:

Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.
Sci Rep 7 pp.9903 - 9903 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.511Å R work:0.196R free:0.252

NDB ID:

5OB3

PDB ID:

5OB3 

Release:

2017-10-04

Title:

iSpinach aptamer

Classification:

RNA

Authors:

Fernandez-Millan, P., Autour, A., Ennifar, E., Westhof, E., Ryckelynck, M.

Citation:

Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI.
RNA 23 pp.1788 - 1795 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.004Å R work:0.198R free:0.222

NDB ID:

5VR4

PDB ID:

5VR4 

Release:

2017-10-04

Title:

RNA octamer containing 2'-F-4'-OMe U.

Classification:

RNA

Authors:

Malek-Adamian, E., Guenther, D.C., Matsuda, S., Martinez-Montero, S., Zlatev, I., Harp, J., Burai Patrascu, M., Foster, D.J., Fakhoury, J., Perkins, L., Moitessier, N., Manoharan, R.M., Taneja, N., Bisbe, A., Charisse, K., Maier, M., Rajeev, K.G., Egli, M., Manoharan, M., Damha, M.J.

Citation:

4'-C-Methoxy-2'-deoxy-2'-fluoro Modified Ribonucleotides Improve Metabolic Stability and Elicit Efficient RNAi-Mediated Gene Silencing.
J. Am. Chem. Soc. 139 pp.14542 - 14555 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.186R free:0.242