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As of 19-Apr-2017 number of released structures: 8825
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3264  Download results as an excel file       Gallery view

NDB ID:

2NCQ

PDB ID:

2NCQ 

Release:

2017-04-19

Title:

Structural insights of r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS) at 45 degree C

Classification:

RNA

Authors:

Mishra, S.K., Kumar, A.

Citation:

Structural insights reveal the dynamics of the repeating r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS)
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2NCR

PDB ID:

2NCR 

Release:

2017-04-19

Title:

Structural insight for dynamics of r(CGG) motif RNA found in Fragile X syndrome/ Fragile X tremor ataxia at 25 degree C

Classification:

RNA

Authors:

Mishra, S.K., Kumar, A.

Citation:

Structural insights reveal the dynamics of the repeating r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS)
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5UK4

PDB ID:

5UK4 

Release:

2017-04-19

Title:

VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307

Classification:

Viral Protein/RNA/Immune System

Authors:

Hanke, L., Schmidt, F.I., Knockenhauer, K.E., Morin, B., Whelan, S.P., Schwartz, T.U., Ploegh, H.L.

Citation:

Vesicular stomatitis virus N protein-specific single-domain antibody fragments inhibit replication.
EMBO Rep. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.204Å R work:0.236R free:0.287

NDB ID:

5UKB

PDB ID:

5UKB 

Release:

2017-04-19

Title:

VSV N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1004

Classification:

Viral Protein/RNA/Immune System

Authors:

Hanke, L., Schmidt, F.I., Knockenhauer, K.E., Morin, B., Whelan, S.P., Schwartz, T.U., Ploegh, H.L.

Citation:

Vesicular stomatitis virus N protein-specific single-domain antibody fragments inhibit replication.
EMBO Rep. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:5.473Å R work:0.336R free:0.337

NDB ID:

5V7C

PDB ID:

5V7C 

Release:

2017-04-19

Title:

Crystal structure of LARP1-unique domain DM15 bound 5'TOP RNA sequence

Classification:

RNA BINDING PROTEIN

Authors:

Lahr, R.M., Fonseca, B.D., Ciotti, G.E., Al-Ashtal, H.A., Jia, J.J., Niklaus, M.R., Blagden, S.P., Alain, T., Berman, A.J.

Citation:

La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs.
Elife 6 pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.59Å R work:0.206R free:0.235

NDB ID:

5SZE

PDB ID:

5SZE 

Release:

2017-04-12

Title:

Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A

Classification:

RNA-binding protein/RNA

Authors:

Stanek, K.A., Patterson-West, J., Randolph, P.S., Mura, C.

Citation:

Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode.
Acta Crystallogr D Struct Biol 73 pp.294 - 315 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.144R free:0.172

NDB ID:

5TSN

PDB ID:

5TSN 

Release:

2017-04-12

Title:

Crystal structures of Norwalk virus polymerase bound to an RNA primer-template duplex

Classification:

TRANSFERASE/RNA

Authors:

Shaik, M.M., Bhattacharjee, N., Feliks, M., Ng, K.K., Field, M.J.

Citation:

Norovirus RNA-dependent RNA polymerase: A computational study of metal-binding preferences.
Proteins pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.174R free:0.219

NDB ID:

5UH5

PDB ID:

5UH5 

Release:

2017-04-12

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3 nt of RNA

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Lin, W., Mandal, S., Degen, D., Yu, L., Ebright, Y.W., Li, S., Feng, Y., Zhang, Y., Mandal, S., Jiang, Y., Liu, S., Gigliotti, M., Talaue, M., Connell, N., Das, K., Arnold, E., Ebright, R.H.

Citation:

Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition
Mol.Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.746Å R work:0.193R free:0.248

NDB ID:

5UH6

PDB ID:

5UH6 

Release:

2017-04-12

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 2ntRNA in complex with Rifampin

Classification:

transcription/dna/rna/antibiotic

Authors:

Lin, W., Mandal, S., Degen, D., Yu, L., Ebright, Y.W., Li, S., Feng, Y., Zhang, Y., Mandal, S., Jiang, Y., Liu, S., Gigliotti, M., Talaue, M., Connell, N., Das, K., Arnold, E., Ebright, R.H.

Citation:

Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition
Mol.Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.837Å R work:0.211R free:0.263

NDB ID:

5UH8

PDB ID:

5UH8 

Release:

2017-04-12

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNA

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Lin, W., Mandal, S., Degen, D., Yu, L., Ebright, Y.W., Li, S., Feng, Y., Zhang, Y., Mandal, S., Jiang, Y., Liu, S., Gigliotti, M., Talaue, M., Connell, N., Das, K., Arnold, E., Ebright, R.H.

Citation:

Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition
Mol.Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:4.176Å R work:0.2R free:0.256

NDB ID:

5UH9

PDB ID:

5UH9 

Release:

2017-04-12

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 2nt RNA

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Lin, W., Mandal, S., Degen, D., Yu, L., Ebright, Y.W., Li, S., Feng, Y., Zhang, Y., Mandal, S., Jiang, Y., Liu, S., Gigliotti, M., Talaue, M., Connell, N., Das, K., Arnold, E., Ebright, R.H.

Citation:

Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition
Mol.Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:4.402Å R work:0.281R free:0.331

NDB ID:

5UHC

PDB ID:

5UHC 

Release:

2017-04-12

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3nt RNA in complex with Rifampin

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Lin, W., Mandal, S., Degen, D., Yu, L., Ebright, Y.W., Li, S., Feng, Y., Zhang, Y., Mandal, S., Jiang, Y., Liu, S., Gigliotti, M., Talaue, M., Connell, N., Das, K., Arnold, E., Ebright, R.H.

Citation:

Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition
Mol.Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.796Å R work:0.204R free:0.266

NDB ID:

5LM7

PDB ID:

5LM7 

Release:

2017-04-05

Title:

Crystal structure of the lambda N-Nus factor complex

Classification:

TRANSCRIPTION

Authors:

Said, N., Santos, K., Weber, G., Wahl, M.C.

Citation:

Crystal structure of the lambda N-Nus factor complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.35Å R work:0.296R free:0.335

NDB ID:

5UNE

PDB ID:

5UNE 

Release:

2017-03-29

Title:

Dimerized Structure Gives Further Insight Into the Function of the Novel RNA Gene: HAR1

Classification:

RNA

Authors:

Lares, M., Scott, W.G., Kimberly, T.

Citation:

Dimerized Structure Gives Further Insight Into the Function of the Novel RNA Gene: HAR1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9001Å R work:0.2R free:0.249

NDB ID:

5X2G

PDB ID:

5X2G 

Release:

2017-03-29

Title:

Crystal structure of Campylobacter jejuni Cas9 in complex with sgRNA and target DNA (AGAAACC PAM)

Classification:

HYDROLASE/RNA/DNA

Authors:

Yamada, M., Watanabe, Y., Gootenberg, J.S., Hirano, H., Ran, F.A., Nakane, T., Ishitani, R., Zhang, F., Nishimasu, H., Nureki, O.

Citation:

Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
Mol. Cell 65 pp.1109 - 1121.e3 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.189R free:0.221

NDB ID:

5X2H

PDB ID:

5X2H 

Release:

2017-03-29

Title:

Crystal structure of Campylobacter jejuni Cas9 in complex with sgRNA and target DNA (AGAAACA PAM)

Classification:

HYDROLASE/RNA/DNA

Authors:

Yamada, M., Watanabe, Y., Gootenberg, J.S., Hirano, H., Ran, F.A., Nakane, T., Ishitani, R., Zhang, F., Nishimasu, H., Nureki, O.

Citation:

Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
Mol. Cell 65 pp.1109 - 1121.e3 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.2R free:0.231

NDB ID:

5IP2

PDB ID:

5IP2 

Release:

2017-03-22

Title:

Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex

Classification:

VIRAL PROTEIN/RNA

Authors:

Komoda, K., Narita, M., Yamashita, K., Tanaka, I., Yao, M.

Citation:

Crystal structure of TSWV nucleocapsid protein
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.282R free:0.316

NDB ID:

5UDZ

PDB ID:

5UDZ 

Release:

2017-03-22

Title:

Human LIN28A in complex with let-7f-1 microRNA pre-element

Classification:

RNA Binding Protein/RNA

Authors:

Wang, L., Nam, Y., Lee, A.K., Yu, C., Roth, K., Chen, C., Ransey, E.M., Sliz, P.

Citation:

LIN28 Zinc Knuckle Domain Is Required and Sufficient to Induce let-7 Oligouridylation.
Cell Rep 18 pp.2664 - 2675 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.164R free:0.2

NDB ID:

5UJ2

PDB ID:

5UJ2 

Release:

2017-03-22

Title:

Crystal structure of HCV NS5B genotype 2A JFH-1 isolate with S15G E86Q E87Q C223H V321I mutations and Delta8 neta hairpoin loop deletion in complex with GS-639476 (diphsohate version of GS-9813), Mn2+ and symmetrical primer template 5'-AUAAAUUU

Classification:

immune system/RNA

Authors:

Kirschberg, T.A., Metobo, S., Clarke, M.O., Aktoudianakis, V., Babusis, D., Barauskas, O., Birkus, G., Butler, T., Byun, D., Chin, G., Doerffler, E., Edwards, T.E., Fenaux, M., Lee, R., Lew, W., Mish, M.R., Murakami, E., Park, Y., Squires, N.H., Tirunagari, N., Wang, T., Whitcomb, M., Xu, J., Yang, H., Ye, H., Zhang, L., Appleby, T.C., Feng, J.Y., Ray, A.S., Cho, A., Kim, C.U.

Citation:

Discovery of a 2'-fluoro-2'-C-methyl C-nucleotide HCV polymerase inhibitor and a phosphoramidate prodrug with favorable properties.
Bioorg. Med. Chem. Lett. 27 pp.1840 - 1847 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.184R free:0.226

NDB ID:

5MWI

PDB ID:

5MWI 

Release:

2017-03-08

Title:

Crystal structure of G(CUG)8G duplex

Classification:

RNA

Authors:

Kiliszek, A., Blaszczyk, L., Kierzek, R., Rypniewski, W.

Citation:

Stabilization of RNA hairpins using non-nucleotide linkers and circularization.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.51Å R work:0.191R free:0.256

NDB ID:

5T5A

PDB ID:

5T5A 

Release:

2017-03-08

Title:

Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom

Classification:

RNA

Authors:

Liu, Y., Wilson, T.J., Lilley, D.M.

Citation:

The structure of a nucleolytic ribozyme that employs a catalytic metal ion.
Nat. Chem. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.169R free:0.217

NDB ID:

5V0H

PDB ID:

5V0H 

Release:

2017-03-08

Title:

RNA duplex with 2-MeImpG analogue bound-one binding site

Classification:

RNA

Authors:

Zhang, W., Tam, C.P., Szostak, J.W.

Citation:

RNA duplex with 2-MeImpG analogue bound-one binding site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.227R free:0.272

NDB ID:

5L4O

PDB ID:

5L4O 

Release:

2017-03-01

Title:

Structure of an E.coli initiator tRNAfMet A1-U72 variant

Classification:

TRANSLATION

Authors:

Monestier, A., Aleksandrov, A., Coureux, P.D., Panvert, M., Mechulam, Y., Schmitt, E.

Citation:

The structure of an E. coli tRNAfMet A1-U72 variant shows an unusual conformation of the A1-U72 base pair.
RNA pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.799Å R work:0.196R free:0.226

NDB ID:

5UDI

PDB ID:

5UDI 

Release:

2017-03-01

Title:

IFIT1 monomeric mutant (L457E/L464E) with m7Gppp-AAAA (syn and anti conformations of cap)

Classification:

RNA BINDING PROTEIN

Authors:

Abbas, Y.M., Laudenbach, B.T., Martinez-Montero, S., Cencic, R., Habjan, M., Pichlmair, A., Damha, M.J., Pelletier, J., Nagar, B.

Citation:

Structure of human IFIT1 with capped RNA reveals adaptable mRNA binding and mechanisms for sensing N1 and N2 ribose 2'-O methylations.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E2106 - E2115 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.58Å R work:0.157R free:0.177

NDB ID:

5UDJ

PDB ID:

5UDJ 

Release:

2017-03-01

Title:

IFIT1 monomeric mutant (L457E/L464E) with Gppp-AAAA

Classification:

RNA BINDING PROTEIN

Authors:

Abbas, Y.M., Laudenbach, B.T., Martinez-Montero, S., Cencic, R., Habjan, M., Pichlmair, A., Damha, M.J., Pelletier, J., Nagar, B.

Citation:

Structure of human IFIT1 with capped RNA reveals adaptable mRNA binding and mechanisms for sensing N1 and N2 ribose 2'-O methylations.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E2106 - E2115 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.69Å R work:0.159R free:0.18

NDB ID:

5UDK

PDB ID:

5UDK 

Release:

2017-03-01

Title:

IFIT1 monomeric mutant (L457E/L464E) with PPP-AAAA

Classification:

RNA BINDING PROTEIN

Authors:

Abbas, Y.M., Laudenbach, B.T., Martinez-Montero, S., Cencic, R., Habjan, M., Pichlmair, A., Damha, M.J., Pelletier, J., Nagar, B.

Citation:

Structure of human IFIT1 with capped RNA reveals adaptable mRNA binding and mechanisms for sensing N1 and N2 ribose 2'-O methylations.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E2106 - E2115 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.164R free:0.184

NDB ID:

5UDL

PDB ID:

5UDL 

Release:

2017-03-01

Title:

IFIT1 N216A monomeric mutant (L457E/L464E) with m7Gppp-AAAA (anti conformation of cap)

Classification:

RNA BINDING PROTEIN

Authors:

Abbas, Y.M., Laudenbach, B.T., Martinez-Montero, S., Cencic, R., Habjan, M., Pichlmair, A., Damha, M.J., Pelletier, J., Nagar, B.

Citation:

Structure of human IFIT1 with capped RNA reveals adaptable mRNA binding and mechanisms for sensing N1 and N2 ribose 2'-O methylations.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E2106 - E2115 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.164R free:0.181

NDB ID:

2RVO

PDB ID:

2RVO 

Release:

2017-02-08

Title:

Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish

Classification:

RNA

Authors:

Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G.

Citation:

Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5HO4

PDB ID:

5HO4 

Release:

2017-02-08

Title:

Crystal structure of hnRNPA2B1 in omplex with 10-mer RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B.X., Su, S.C., Gan, J.H., Ma, J.B.

Citation:

Structure Basis for RNA-binding Properties of the RNA Recognition Motifs of hnRNPA2B1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.182R free:0.22

NDB ID:

5MSG

PDB ID:

5MSG 

Release:

2017-02-08

Title:

Influenza B polymerase bound to vRNA promoter and capped RNA primer

Classification:

VIRAL PROTEIN

Authors:

Reich, S., Guilligay, D., Cusack, S.

Citation:

An in vitro fluorescence based study of initiation of RNA synthesis by influenza B polymerase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.8Å R work:0.234R free:0.267

NDB ID:

5T16

PDB ID:

5T16 

Release:

2017-02-08

Title:

Crystal structure of yeast RNase III (Rnt1p) complexed with a non-hydrolyzable RNA substrate analog

Classification:

hydrolase/rna

Authors:

Song, H., Fang, X., Jin, L., Shaw, G.X., Wang, Y.X., Ji, X.

Citation:

The Functional Cycle of Rnt1p: Five Consecutive Steps of Double-Stranded RNA Processing by a Eukaryotic RNase III.
Structure 25 pp.353 - 363 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.783Å R work:0.225R free:0.265

NDB ID:

5WTK

PDB ID:

5WTK 

Release:

2017-02-08

Title:

Crystal structure of RNP complex

Classification:

HYDROLASE/RNA

Authors:

Liu, L., Li, X., Wang, J., Wang, M., Chen, P., Yin, M., Li, J., Sheng, G., Wang, Y.

Citation:

Two Distant Catalytic Sites Are Responsible for C2c2 RNase Activities
Cell 168 pp.121 - 134.e12 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.651Å R work:0.258R free:0.271

NDB ID:

5HSW

PDB ID:

5HSW 

Release:

2017-02-01

Title:

KSHV SOX RNA complex

Classification:

HYDROLASE

Authors:

Lee, H., Patschull, A.O., Bagneris, C., Ryan, H., Sanderson, C.M., Ebrahimi, B., Nobeli, I., Barrett, T.E.

Citation:

KSHV SOX mediated host shutoff: the molecular mechanism underlying mRNA transcript processing.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.208R free:0.261

NDB ID:

5I8Q

PDB ID:

5I8Q 

Release:

2017-02-01

Title:

S. cerevisiae Prp43 in complex with RNA and ADPNP

Classification:

HYDROLASE

Authors:

He, Y., Nielsen, K.H., Andersen, G.R., Staley, J.

Citation:

Structure of helicase
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:4.2Å R work:0.26R free:0.286

NDB ID:

5U3G

PDB ID:

5U3G 

Release:

2017-02-01

Title:

Structure of the Dickeya dadantii ykkC riboswitch bound to guanidinium

Classification:

RNA

Authors:

Battaglia, R.A., Price, I.R., Ke, A.

Citation:

Structural basis for guanidine sensing by the ykkC family of riboswitches.
RNA 23 pp.578 - 585 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.192R free:0.212

NDB ID:

2N8L

PDB ID:

2N8L 

Release:

2017-01-25

Title:

Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the KH3 RNA target

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Nicastro, G., Candel, A.M., Ramos, A., Hollingworth, D.

Citation:

Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the RNA target GCACACCC
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2N8M

PDB ID:

2N8M 

Release:

2017-01-25

Title:

Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the KH4 RNA target

Classification:

RNA Binding Protein/RNA

Authors:

Nicastro, G., Ramos, A., Candel, A., Hollingworth, D.

Citation:

Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the RNA target UCGGACU
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5DGE

PDB ID:

5DGE 

Release:

2017-01-25

Title:

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Classification:

RIBOSOME

Authors:

Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.

Citation:

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.45Å R work:0.207R free:0.262

NDB ID:

5LTA

PDB ID:

5LTA 

Release:

2017-01-25

Title:

Crystal structure of the Prp43-ADP-BeF3-U7-RNA complex

Classification:

Protein/RNA

Authors:

Tauchert, M.J., Fourmann, J.B., Luhrmann, R., Ficner, R.

Citation:

Structural insights into the mechanism of the DEAH-box RNA helicase Prp43.
Elife 6 pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.621Å R work:0.197R free:0.229

NDB ID:

5LYS

PDB ID:

5LYS 

Release:

2017-01-25

Title:

The crystal structure of 7SK 5'-hairpin - Gold derivative

Classification:

RNA

Authors:

Martinez-Zapien, D., Legrand, P., McEwen, A.G., Proux, F., Cragnolini, T., Pasquali, S., Dock-Bregeon, A.C.

Citation:

The crystal structure of the 5' functional domain of the transcription riboregulator 7SK.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.32Å R work:0.184R free:0.227

NDB ID:

5LYU

PDB ID:

5LYU 

Release:

2017-01-25

Title:

The native crystal structure of 7SK 5'-hairpin

Classification:

RNA

Authors:

Martinez-Zapien, D., Legrand, P., McEwen, A.G., Proux, F., Cragnolini, T., Pasquali, S., Dock-Bregeon, A.C.

Citation:

The crystal structure of the 5' functional domain of the transcription riboregulator 7SK.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.191R free:0.239

NDB ID:

5LYV

PDB ID:

5LYV 

Release:

2017-01-25

Title:

The crystal structure of 7SK 5'-hairpin - Osmium derivative

Classification:

RNA

Authors:

Martinez-Zapien, D., Legrand, P., McEwen, A.G., Proux, F., Cragnolini, T., Pasquali, S., Dock-Bregeon, A.C.

Citation:

The crystal structure of the 5' functional domain of the transcription riboregulator 7SK.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.198R free:0.231

NDB ID:

5U30

PDB ID:

5U30 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-extended target DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.92Å R work:0.205R free:0.244

NDB ID:

5U31

PDB ID:

5U31 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-8mer substrate DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.89Å R work:0.197R free:0.239

NDB ID:

5U33

PDB ID:

5U33 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-extended non-target DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.75Å R work:0.245R free:0.286

NDB ID:

5U34

PDB ID:

5U34 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA binary complex

Classification:

HYDROLASE/RNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.255Å R work:0.269R free:0.323

NDB ID:

5WQE

PDB ID:

5WQE 

Release:

2017-01-25

Title:

Crystal structure of Alicyclobacillus acidoterrestris C2c1 in complex with single-guide RNA at 3.1 Angstrom resolution

Classification:

RNA BINDING PROTEIN

Authors:

Liu, L., Chen, P., Wang, M., Li, X., Wang, J., Yin, M., Wang, Y.

Citation:

C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism
Mol. Cell 65 pp.310 - 322 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.126Å R work:0.237R free:0.268

NDB ID:

5WTY

PDB ID:

5WTY 

Release:

2017-01-25

Title:

Structure of Nop9 RNA complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wang, B., Ye, K.

Citation:

Nop9 binds the central pseudoknot region of 18S rRNA
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.785Å R work:0.176R free:0.237

NDB ID:

5HJZ

PDB ID:

5HJZ 

Release:

2017-01-18

Title:

Structure of M. tuberculosis MazF-mt1 (Rv2801c) in complex with RNA

Classification:

hydrolase/rna

Authors:

Yen, T.J., Brennan, R.G.

Citation:

Structure of M. tuberculosis MazF-mt1 (Rv2801c) in complex with RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.976Å R work:0.206R free:0.23

NDB ID:

5HK0

PDB ID:

5HK0 

Release:

2017-01-18

Title:

Crystal structure of M. tuberculosis MazF-mt3 (Rv1991c) in complex with RNA

Classification:

hydrolase/rna

Authors:

Yen, T.J., Brennan, R.G.

Citation:

Crystal structure of M. tuberculosis MazF-mt3 (Rv1991c) in complex with RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.212R free:0.256