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As of 10-Oct-2018 number of released structures: 9808
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6658  Download results as an excel file       Gallery view

NDB ID:

6EKO

PDB ID:

6EKO 

Release:

2018-10-10

Title:

Crystal structure of Type IIP restriction endonuclease PfoI with cognate DNA

Classification:

HYDROLASE

Authors:

Tamulaitiene, G., Manakova, E., Jovaisaite, V., Grazulis, S., Siksnys, V.

Citation:

Crystal structure of Type IIP restriction endonuclease PfoI with cognate DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.284Å R work:0.205R free:0.247

NDB ID:

6F1K

PDB ID:

6F1K 

Release:

2018-10-10

Title:

Structure of ARTD2/PARP2 WGR domain bound to double strand DNA without 5'phosphate

Classification:

DNA BINDING PROTEIN

Authors:

Obaji, E., Haikarainen, T., Lehtio, L.

Citation:

Structural basis of DNA single strand break recognition and DNA end joining by human ARTD2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.213R free:0.249

NDB ID:

6F5B

PDB ID:

6F5B 

Release:

2018-10-10

Title:

Structure of ARTD2/PARP2 WGR domain bound to double stranded DNA with 5'phosphate

Classification:

DNA BINDING PROTEIN

Authors:

Obaji, E., Haikarainen, T., Lehtio, L.

Citation:

Structural basis of DNA single strand break recognition and DNA end joining by human ARTD2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.208R free:0.273

NDB ID:

6F5F

PDB ID:

6F5F 

Release:

2018-10-10

Title:

Structure of ARTD2/PARP2 WGR domain bound to double strand DNA with 5 nucleotide overhang and 5'phosphate

Classification:

DNA BINDING PROTEIN

Authors:

Obaji, E., Haikarainen, T., Lehtio, L.

Citation:

Structural basis of DNA single strand break recognition and DNA end joining by human ARTD2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.98Å R work:0.228R free:0.275

NDB ID:

5YUV

PDB ID:

5YUV 

Release:

2018-10-03

Title:

DNA polymerase IV - DNA ternary complex 5

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.06Å R work:0.187R free:0.233

NDB ID:

6DNW

PDB ID:

6DNW 

Release:

2018-10-03

Title:

Sequence Requirements of the Listeria innocua prophage attP site

Classification:

DNA BINDING PROTEIN

Authors:

Li, H., Sharp, R., Rutherford, K., Gupta, K., Van Duyne, G.D.

Citation:

Serine Integrase attP Binding and Specificity.
J. Mol. Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.849Å R work:0.219R free:0.256

NDB ID:

5YEJ

PDB ID:

5YEJ 

Release:

2018-09-26

Title:

Crystal structure of BioQ with its naturel double-stranded DNA operator

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yan, L., Tang, Q., Guan, Z., Pei, K., Zou, T., He, J.

Citation:

Structural insights into operator recognition by BioQ in the Mycobacterium smegmatis biotin synthesis pathway.
Biochim Biophys Acta Gen Subj 1862 pp.1843 - 1851 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.698Å R work:0.211R free:0.265

NDB ID:

5YEY

PDB ID:

5YEY 

Release:

2018-09-26

Title:

The structure of a chair-type G-quadruplex of the human telomeric variant in K+ solution

Classification:

DNA

Authors:

Liu, C., Zhou, B., Kuryavyi, V.V., Zhu, G.

Citation:

The structure of a chair-type G-quadruplex of the human telomeric variant in solution
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5ZMN

PDB ID:

5ZMN 

Release:

2018-09-26

Title:

Sulfur binding domain and SRA domain of ScoMcrA complexed with phosphorothioated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, G., Fu, W., Zhang, Z., He, Y., Yu, H., Zhao, Y., Deng, Z., Wu, G., He, X.

Citation:

Structural basis for the recognition of sulfur in phosphorothioated DNA
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.29Å R work:0.25R free:0.287

NDB ID:

5ZMO

PDB ID:

5ZMO 

Release:

2018-09-26

Title:

Sulfur binding domain of ScoMcrA complexed with phosphorothioated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, G., Fu, W., Zhang, Z., He, Y., Yu, H., Zhao, Y., Deng, Z., Wu, G., He, X.

Citation:

Structural basis for the recognition of sulfur in phosphorothioated DNA
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.69Å R work:0.188R free:0.227

NDB ID:

6BTE

PDB ID:

6BTE 

Release:

2018-09-26

Title:

DNA Polymerase Beta I260Q Binary Complex

Classification:

TRANSFERASE,LYASE/DNA

Authors:

Liptak, C., Mahmoud, M.M., Eckenroth, B.E., Moreno, M.V., East, K., Alnajjar, K.S., Huang, J., Towle-Weicksel, J.B., Doublie, S., Loria, J.P., Sweasy, J.B.

Citation:

I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.185R free:0.229

NDB ID:

6BTF

PDB ID:

6BTF 

Release:

2018-09-26

Title:

DNA Polymerase Beta I260Q Ternary Complex

Classification:

TRANSFERASE,LYASE/DNA

Authors:

Liptak, C., Mahmoud, M.M., Eckenroth, B.E., Moreno, M.V., East, K., Alnajjar, K.S., Huang, J., Towle-Weicksel, J.B., Doublie, S., Loria, J.P., Sweasy, J.B.

Citation:

I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.174R free:0.213

NDB ID:

6CG8

PDB ID:

6CG8 

Release:

2018-09-26

Title:

Structure of C. crescentus GapR-DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Guo, M.S., Haakonsen, D.L., Zeng, W., Schumacher, M.A., Laub, M.T.

Citation:

A Bacterial Chromosome Structuring Protein Binds Overtwisted DNA to Stimulate Type II Topoisomerases and Enable DNA Replication.
Cell pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.299Å R work:0.248R free:0.277

NDB ID:

6FBC

PDB ID:

6FBC 

Release:

2018-09-26

Title:

KlenTaq DNA polymerase processing a modified primer - bearing the modification at the 3'-terminus of the primer.

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Durr, S.L., Peter, C., Diederichs, K., Marx, A.

Citation:

Snapshots of a modified nucleotide moving through the confines of a DNA polymerase.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.9992 - 9997 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.54Å R work:0.185R free:0.208

NDB ID:

6FBD

PDB ID:

6FBD 

Release:

2018-09-26

Title:

KlenTaq DNA polymerase processing a modified primer - bearing the modification upstream at the second primer nucleotide.

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Durr, S.L., Peter, C., Diederichs, K., Marx, A.

Citation:

Snapshots of a modified nucleotide moving through the confines of a DNA polymerase.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.9992 - 9997 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.099Å R work:0.198R free:0.233

NDB ID:

6FBE

PDB ID:

6FBE 

Release:

2018-09-26

Title:

KlenTaq DNA polymerase processing a modified primer - bearing the modification upstream at the third primer nucleotide.

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Durr, S.L., Peter, C., Diederichs, K., Marx, A.

Citation:

Snapshots of a modified nucleotide moving through the confines of a DNA polymerase.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.9992 - 9997 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.589Å R work:0.175R free:0.203

NDB ID:

6FBF

PDB ID:

6FBF 

Release:

2018-09-26

Title:

KlenTaq DNA polymerase processing a modified primer - bearing the modification upstream at the fourth primer nucleotide.

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Durr, S.L., Peter, C., Diederichs, K., Marx, A.

Citation:

Snapshots of a modified nucleotide moving through the confines of a DNA polymerase.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.9992 - 9997 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.001Å R work:0.199R free:0.225

NDB ID:

6FBG

PDB ID:

6FBG 

Release:

2018-09-26

Title:

KlenTaq DNA polymerase processing a modified primer - bearing the modification upstream at the fifth primer nucleotide.

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Durr, S.L., Peter, C., Diederichs, K., Marx, A.

Citation:

Snapshots of a modified nucleotide moving through the confines of a DNA polymerase.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.9992 - 9997 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.702Å R work:0.194R free:0.216

NDB ID:

6FBH

PDB ID:

6FBH 

Release:

2018-09-26

Title:

KlenTaq DNA polymerase processing a modified primer - bearing the modification upstream at the sixth primer nucleotide.

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Durr, S.L., Peter, C., Diederichs, K., Marx, A.

Citation:

Snapshots of a modified nucleotide moving through the confines of a DNA polymerase.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.9992 - 9997 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.196R free:0.223

NDB ID:

6FBI

PDB ID:

6FBI 

Release:

2018-09-26

Title:

KlenTaq DNA polymerase in a closed, ternary complex with dGpNHpp bound in the active site

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Durr, S.L., Peter, C., Diederichs, K., Marx, A.

Citation:

Snapshots of a modified nucleotide moving through the confines of a DNA polymerase.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.9992 - 9997 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.207R free:0.235

NDB ID:

6FFR

PDB ID:

6FFR 

Release:

2018-09-26

Title:

DNA-RNA Hybrid Quadruplex with Flipped Tetrad

Classification:

DNA-RNA HYBRID

Authors:

Haase, L., Dickerhoff, J., Weisz, K.

Citation:

DNA-RNA Hybrid Quadruplexes Reveal Interactions that Favor RNA Parallel Topologies.
Chemistry pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6GRB

PDB ID:

6GRB 

Release:

2018-09-26

Title:

eukaryotic junction-resolving enzyme GEN-1 binding with Potassium

Classification:

DNA

Authors:

Liu, Y., Freeman, A.D.J., Declais, A.C., Lilley, D.M.J.

Citation:

A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.246R free:0.272

NDB ID:

6GRC

PDB ID:

6GRC 

Release:

2018-09-26

Title:

eukaryotic junction-resolving enzyme GEN-1 binding with Sodium

Classification:

DNA

Authors:

Liu, Y., Freeman, A.D.J., Declais, A.C., Lilley, D.M.J.

Citation:

A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.452Å R work:0.23R free:0.258

NDB ID:

6GRD

PDB ID:

6GRD 

Release:

2018-09-26

Title:

eukaryotic junction-resolving enzyme GEN-1 binding with Cesium

Classification:

DNA

Authors:

Liu, Y., Freeman, A.D.J., Declais, A.C., Lilley, D.M.J.

Citation:

A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.66Å R work:0.244R free:0.262

NDB ID:

6GZN

PDB ID:

6GZN 

Release:

2018-09-26

Title:

Adenine-driven structural switch from two- to three-quartet DNA G-quadruplex

Classification:

DNA

Authors:

Plavec, J., Lenarcic Zivkovic, M., Rozman, J.

Citation:

Adenine-driven structural switch from two- to three-quartet DNA G-quadruplex.
Angew.Chem.Int.Ed.Engl. pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

5Z80

PDB ID:

5Z80 

Release:

2018-09-19

Title:

Solution structure for the 1:1 complex of a platinum(II)-based tripod bound to a hybrid-1 human telomeric G-quadruplex

Classification:

DNA

Authors:

Liu, W., Zhong, Y.F., Liu, L.Y., Shen, C.T., Zeng, W., Wang, F., Yang, D., Mao, Z.W.

Citation:

Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding
Nat Commun 9 pp.3496 - 3496 2018

Experiment:

SOLUTION NMR

NDB ID:

5Z8F

PDB ID:

5Z8F 

Release:

2018-09-19

Title:

Solution structure for the unique dimeric 4:2 complex of a platinum(II)-based tripod bound to a hybrid-1 human telomeric G-quadruplex

Classification:

DNA

Authors:

Liu, W., Zhong, Y.F., Liu, L.Y., Shen, C.T., Zeng, W., Wang, F., Yang, D., Mao, Z.W.

Citation:

Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding
Nat Commun 9 pp.3496 - 3496 2018

Experiment:

SOLUTION NMR

NDB ID:

5ZMC

PDB ID:

5ZMC 

Release:

2018-09-19

Title:

Structural Basis for Reactivation of -146C>T Mutant TERT Promoter by cooperative binding of p52 and ETS1/2

Classification:

TRANSCRIPTION/DNA

Authors:

Xu, X., Li, Y., Bharath, S.R., Ozturk, M.B., Bowler, M.W., Loo, B.Z.L., Tergaonkar, V., Song, H.

Citation:

Structural basis for reactivating the mutant TERT promoter by cooperative binding of p52 and ETS1
Nat Commun 9 pp.3183 - 3183 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.99Å R work:0.258R free:0.288

NDB ID:

5ZYT

PDB ID:

5ZYT 

Release:

2018-09-19

Title:

Crystal structure of human MGME1 with 3' overhang double strand DNA3

Classification:

DNA BINDING PROTEIN

Authors:

Yang, C., Gan, J.

Citation:

crystal structure of human MGME1 with 3' overhang double strand DNA3
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.702Å R work:0.249R free:0.296

NDB ID:

5ZYU

PDB ID:

5ZYU 

Release:

2018-09-19

Title:

Crytal struture of humanMGME1 with single strand DNA2

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yang, C., Gan, J.

Citation:

crytal struture of humanMGME1 with single strand DNA2
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.752Å R work:0.173R free:0.199

NDB ID:

5ZYV

PDB ID:

5ZYV 

Release:

2018-09-19

Title:

Crystal structure of human MGME1 with single strand DNA2 and Ca2+

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yang, C., Gan, J.

Citation:

crystal structure of human MGME1 with single strand DNA2 and Ca2+
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.72Å R work:0.211R free:0.253

NDB ID:

6B1Q

PDB ID:

6B1Q 

Release:

2018-09-19

Title:

Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hoshika, S., Singh, I., Switzer, C., Molt Jr., R.W., Leal, N.A., Kim, M.J., Kim, M.S., Kim, H.J., Georgiadis, M.M., Benner, S.A.

Citation:

""Skinny"" and ""Fat"" DNA: Two New Double Helices.
J. Am. Chem. Soc. 140 pp.11655 - 11660 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.204R free:0.237

NDB ID:

6B1R

PDB ID:

6B1R 

Release:

2018-09-19

Title:

Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hoshika, S., Singh, I., Switzer, C., Molt Jr., R.W., Leal, N.A., Kim, M.J., Kim, M.S., Kim, H.J., Georgiadis, M.M., Benner, S.A.

Citation:

""Skinny"" and ""Fat"" DNA: Two New Double Helices.
J. Am. Chem. Soc. 140 pp.11655 - 11660 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.69Å R work:0.202R free:0.229

NDB ID:

6B1S

PDB ID:

6B1S 

Release:

2018-09-19

Title:

Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hoshika, S., Singh, I., Switzer, C., Molt Jr., R.W., Leal, N.A., Kim, M.J., Kim, M.S., Kim, H.J., Georgiadis, M.M., Benner, S.A.

Citation:

""Skinny"" and ""Fat"" DNA: Two New Double Helices.
J. Am. Chem. Soc. 140 pp.11655 - 11660 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.216R free:0.251

NDB ID:

6DT1

PDB ID:

6DT1 

Release:

2018-09-19

Title:

Crystal structure of the ligase from bacteriophage T4 complexed with DNA intermediate

Classification:

LIGASE/DNA

Authors:

Shi, K., Bohl, T.E., Park, J., Zasada, A., Malik, S., Banerjee, S., Tran, V., Li, N., Yin, Z., Kurniawan, F., Orellana, K., Aihara, H.

Citation:

T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.169R free:0.219

NDB ID:

6DWW

PDB ID:

6DWW 

Release:

2018-09-19

Title:

Hermes transposase deletion dimer complex with (A/T) DNA and Mn2+

Classification:

dna binding protein/dna

Authors:

Dyda, F., Hickman, A.B.

Citation:

Hermes transposase deletion dimer complex with (A/T) DNA and Mn2+
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.851Å R work:0.199R free:0.263

NDB ID:

6DWY

PDB ID:

6DWY 

Release:

2018-09-19

Title:

Hermes transposase deletion dimer complex with (C/G) DNA and Ca2+

Classification:

dna binding protein/dna

Authors:

Dyda, F., Hickman, A.B.

Citation:

Hermes transposase deletion dimer complex with (C/G) DNA and Ca
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.259R free:0.295

NDB ID:

6DWZ

PDB ID:

6DWZ 

Release:

2018-09-19

Title:

Hermes transposase deletion dimer complex with (C/G) DNA

Classification:

dna binding protein/dna

Authors:

Dyda, F., Hickman, A.B.

Citation:

Hermes transposase deletion dimer complex with (C/G) DNA and Ca
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.202R free:0.298

NDB ID:

6DX0

PDB ID:

6DX0 

Release:

2018-09-19

Title:

Hermes transposase deletion dimer complex with (A/T) DNA

Classification:

dna binding protein/dna

Authors:

Dyda, F., Hickman, A.B.

Citation:

Hermes transposase deletion dimer complex with (C/G) DNA and Ca
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.225R free:0.304

NDB ID:

6GCD

PDB ID:

6GCD 

Release:

2018-09-19

Title:

DNA binding domain of restriction endonuclease McrBC in complex with 5-hydroxymethylcytosine DNA

Classification:

DNA BINDING PROTEIN

Authors:

Zagorskaite, E., Manakova, E., Sasnauskas, G.

Citation:

Recognition of modified cytosine variants by the DNA binding domain of methyl-directed endonuclease McrBC.
FEBS Lett. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.165R free:0.214

NDB ID:

6GCE

PDB ID:

6GCE 

Release:

2018-09-19

Title:

DNA binding domain of restriction endonuclease McrBC in complex with 5-formylcytosine DNA

Classification:

DNA BINDING PROTEIN

Authors:

Zagorskaite, E., Manakova, E., Sasnauskas, G.

Citation:

Recognition of modified cytosine variants by the DNA binding domain of methyl-directed endonuclease McrBC.
FEBS Lett. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.167R free:0.205

NDB ID:

6GCF

PDB ID:

6GCF 

Release:

2018-09-19

Title:

DNA binding domain of restriction endonuclease McrBC in complex with N4-methylcytosine DNA

Classification:

DNA BINDING PROTEIN

Authors:

Zagorskaite, E., Manakova, E., Sasnauskas, G.

Citation:

Recognition of modified cytosine variants by the DNA binding domain of methyl-directed endonuclease McrBC.
FEBS Lett. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.134R free:0.178

NDB ID:

6AU4

PDB ID:

6AU4 

Release:

2018-09-12

Title:

Crystal structure of the major quadruplex formed in the human c-MYC promoter

Classification:

DNA

Authors:

Stump, S., Mou, T.C., Sprang, S.R., Natale, N.R., Beall, H.D.

Citation:

First crystal structure of the major quadruplex formed in the promoter region of the human c-MYC oncogene
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.22R free:0.245

NDB ID:

6M7O

PDB ID:

6M7O 

Release:

2018-09-12

Title:

Human DNA polymerase eta ternary complex with Mn2+ and dTMPNPP oppositing cdA

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.231R free:0.273

NDB ID:

6M7P

PDB ID:

6M7P 

Release:

2018-09-12

Title:

Human DNA polymerase eta extension complex with cdA at the -2 position

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.181R free:0.217

NDB ID:

6M7T

PDB ID:

6M7T 

Release:

2018-09-12

Title:

Human DNA polymerase eta in a non-productive ternary complex with Ca2+ and dTTP oppositing cdA

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.22R free:0.261

NDB ID:

6M7U

PDB ID:

6M7U 

Release:

2018-09-12

Title:

Human DNA polymerase eta in a non-productive ternary complex with Mg2+ and dTMPNPP oppositing cdA

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.254R free:0.284

NDB ID:

6M7V

PDB ID:

6M7V 

Release:

2018-09-12

Title:

Human DNA polymerase eta extension complex with cdA at the -1 position

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.062Å R work:0.236R free:0.267

NDB ID:

5YUT

PDB ID:

5YUT 

Release:

2018-09-05

Title:

DNA polymerase IV - DNA ternary complex 3

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.187R free:0.237

NDB ID:

5YV1

PDB ID:

5YV1 

Release:

2018-09-05

Title:

DNA polymerase IV - DNA ternary complex 13

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.196R free:0.251