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As of 15-May-2018 number of released structures: 9482
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6408  Download results as an excel file       Gallery view

NDB ID:

5NO6

PDB ID:

5NO6 

Release:

2018-05-16

Title:

TEAD4-HOXB13 complex bound to DNA

Classification:

TRANSCRIPTION

Authors:

Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.

Citation:

TEAD4-HOXB13 complex bound to DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.88Å R work:0.239R free:0.316

NDB ID:

5XJW

PDB ID:

5XJW 

Release:

2018-05-16

Title:

Crystal Structure of the [Co2+-(Chromomycin A3)2]-CCG repeats Complex

Classification:

DNA/ANTIBIOTIC

Authors:

Tseng, W.H., Wu, P.C., Satange, R.B., Hou, M.H.

Citation:

Crystal Structure of the [Co2+-(Chromomycin A3)2]-CCG repeats Complex
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.097Å R work:0.225R free:0.245

NDB ID:

6GED

PDB ID:

6GED 

Release:

2018-05-16

Title:

Adhesin domain of PrgB from Enterococcus faecalis bound to DNA

Classification:

CELL ADHESION

Authors:

Schmitt, A., Jiang, K., Camacho, M.I., Jonna, V.R., Hofer, A., Westerlund, F., Christie, P.J., Berntsson, R.P.

Citation:

PrgB Promotes Aggregation, Biofilm Formation, and Conjugation through DNA Binding and Compaction.
Mol. Microbiol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.794Å R work:0.174R free:0.211

NDB ID:

5UK7

PDB ID:

5UK7 

Release:

2018-05-09

Title:

Escherichia coli Hfq bound to dsDNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Orans, J., Kovach, A.R., Hoff, K.E., Brennan, R.G.

Citation:

Crystal structure of Escherichia coli Hfq DNA complex reveals multifunctional nucleic acid binding site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.21R free:0.259

NDB ID:

6CCG

PDB ID:

6CCG 

Release:

2018-05-09

Title:

Crystal structure MBD3 MBD domain in complex with methylated CpG DNA

Classification:

TRANSCRIPTION

Authors:

Liu, K., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Citation:

Crystal structure MBD3 MBD domain in complex with methylated CpG DNA
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.223R free:0.25

NDB ID:

6CEU

PDB ID:

6CEU 

Release:

2018-05-09

Title:

MBD3 MBD in complex with methylated, non-palindromic CpG DNA: alternative interpretation of crystallographic data

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, K., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J.

Citation:

MBD3 MBD in complex with methylated, non-palindromic CpG DNA: alternative interpretation of crystallographic data
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.005Å R work:0.214R free:0.251

NDB ID:

6CEV

PDB ID:

6CEV 

Release:

2018-05-09

Title:

MBD3 MBD in complex with methylated, non-palindromic CpG DNA: alternative interpretation of crystallographic data

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, K., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J.

Citation:

MBD3 MBD in complex with methylated, non-palindromic CpG DNA: alternative interpretation of crystallographic data
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.005Å R work:0.214R free:0.256

NDB ID:

6D1T

PDB ID:

6D1T 

Release:

2018-05-09

Title:

Complex of MBD1-MBD and methylated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, K., Xu, C., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium

Citation:

Complex of MBD1-MBD and methylated DNA
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.234R free:0.269

NDB ID:

5YZY

PDB ID:

5YZY 

Release:

2018-05-02

Title:

AtVAL1 B3 domain in complex with 13bp-DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Wu, B.X., Zhang, M.M.

Citation:

Crystal structure of AtVAL1 B3 domain
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.61Å R work:0.21R free:0.256

NDB ID:

5YZZ

PDB ID:

5YZZ 

Release:

2018-05-02

Title:

AtVAL1 B3 domain in complex with 13bp-DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Wu, B.X., Zhang, M.M.

Citation:

Crystal structure of AtVAL1 B3 domain
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.58Å R work:0.225R free:0.255

NDB ID:

5Z00

PDB ID:

5Z00 

Release:

2018-05-02

Title:

AtVAL1 B3 domain in complex with 15bp-DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Wu, B.X., Zhang, M.M.

Citation:

Crystal structure of AtVAL1 B3 domain
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.587Å R work:0.216R free:0.267

NDB ID:

6CQ3

PDB ID:

6CQ3 

Release:

2018-05-02

Title:

Crystal structure of DNA dodecamer D(CGCGAATTCGCG)

Classification:

DNA

Authors:

Delgado, J.L., Vance, N.R., Kerns, R.J.

Citation:

Crystal structure of DNA dodecamer D(CGCGAATTCGCG)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.3Å R work:0.148R free:0.188

NDB ID:

5XRZ

PDB ID:

5XRZ 

Release:

2018-04-25

Title:

Structure of a ssDNA bound to the inner DNA binding site of RAD52

Classification:

RECOMBINATION

Authors:

Saotome, M., Saito, K., Yasuda, T., Ohtomo, H., Sugiyama, S., Nishimura, Y., Kurumizaka, H., Kagawa, W.

Citation:

Structural Basis of Homology-directed DNA Repair Mediated by RAD52
iScience pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.216R free:0.256

NDB ID:

5XS0

PDB ID:

5XS0 

Release:

2018-04-25

Title:

Structure of a ssDNA bound to the outer DNA binding site of RAD52

Classification:

RECOMBINATION

Authors:

Saotome, M., Saito, K., Yasuda, T., Ohtomo, H., Sugiyama, S., Nishimura, Y., Kurumizaka, H., Kagawa, W.

Citation:

Structural Basis of Homology-directed DNA Repair Mediated by RAD52
iScience pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.221R free:0.25

NDB ID:

5ZDZ

PDB ID:

5ZDZ 

Release:

2018-04-25

Title:

Hairpin Forming Complex, RAG1/2-Nicked 12RSS/23RSS complex in Ca2+

Classification:

DNA BINDING PROTEIN

Authors:

Kim, M.S., Chuenchor, W., Chen, X., Cui, Y., Zhang, X., Zhou, Z.H., Gellert, M., Yang, W.

Citation:

Cracking the DNA Code for V(D)J Recombination
Mol. Cell 70 pp.358 - 370.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.201R free:0.241

NDB ID:

5ZE0

PDB ID:

5ZE0 

Release:

2018-04-25

Title:

Hairpin Forming Complex, RAG1/2-Nicked(with Dideoxy) 12RSS/23RSS complex in Mg2+

Classification:

DNA BINDING PROTEIN

Authors:

Kim, M.S., Chuenchor, W., Chen, X., Cui, Y., Zhang, X., Zhou, Z.H., Gellert, M., Yang, W.

Citation:

Cracking the DNA Code for V(D)J Recombination
Mol. Cell 70 pp.358 - 370.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.199R free:0.233

NDB ID:

5ZE1

PDB ID:

5ZE1 

Release:

2018-04-25

Title:

Hairpin Forming Complex, RAG1/2-Nicked 12RSS/23RSS complex in 2mM Mn2+ for 10 min at 4'C

Classification:

DNA BINDING PROTEIN

Authors:

Kim, M.S., Chuenchor, W., Chen, X., Cui, Y., Zhang, X., Zhou, Z.H., Gellert, M., Yang, W.

Citation:

Cracking the DNA Code for V(D)J Recombination
Mol. Cell 70 pp.358 - 370.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.196R free:0.231

NDB ID:

5ZE2

PDB ID:

5ZE2 

Release:

2018-04-25

Title:

Hairpin Complex, RAG1/2-hairpin 12RSS/23RSS complex in 5mM Mn2+ for 2 min at 4'C

Classification:

DNA BINDING PROTEIN

Authors:

Kim, M.S., Chuenchor, W., Chen, X., Cui, Y., Zhang, X., Zhou, Z.H., Gellert, M., Yang, W.

Citation:

Cracking the DNA Code for V(D)J Recombination
Mol. Cell 70 pp.358 - 370.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.199R free:0.236

NDB ID:

5ZLN

PDB ID:

5ZLN 

Release:

2018-04-25

Title:

Crystal structure of mouse TLR9 in complex with two DNAs (CpG DNA and TCGCCA DNA)

Classification:

IMMUNE SYSTEM

Authors:

Ishida, H., Ohto, U., Shibata, T., Miyake, K., Shimizu, T.

Citation:

Structural basis for species-specific activation mechanism by mouse Toll-like receptor 9
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.191R free:0.238

NDB ID:

6CIK

PDB ID:

6CIK 

Release:

2018-04-25

Title:

Pre-Reaction Complex, RAG1(E962Q)/2-intact/nicked 12/23RSS complex in Mn2+

Classification:

RECOMBINATION/DNA

Authors:

Kim, M.S., Chuenchor, W., Chen, X., Cui, Y., Zhang, X., Zhou, Z.H., Gellert, M., Yang, W.

Citation:

Cracking the DNA Code for V(D)J Recombination.
Mol. Cell 70 pp.358 - 370.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.15Å R work:0.208R free:0.248

NDB ID:

6CIL

PDB ID:

6CIL 

Release:

2018-04-25

Title:

PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+

Classification:

RECOMBINATION/DNA

Authors:

Kim, M.S., Chuenchor, W., Chen, X., Cui, Y., Zhang, X., Zhou, Z.H., Gellert, M., Yang, W.

Citation:

Cracking the DNA Code for V(D)J Recombination.
Mol. Cell 70 pp.358 - 370.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:4.15Å R work:0.206R free:0.23

NDB ID:

6CIM

PDB ID:

6CIM 

Release:

2018-04-25

Title:

Pre-Reaction Complex, RAG1(E962Q)/2-nicked/intact 12/23RSS complex in Mn2+

Classification:

RECOMBINATION/DNA

Authors:

Kim, M.S., Chuenchor, W., Chen, X., Cui, Y., Zhang, X., Zhou, Z.H., Gellert, M., Yang, W.

Citation:

Cracking the DNA Code for V(D)J Recombination.
Mol. Cell 70 pp.358 - 370.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.214R free:0.253

NDB ID:

6F4Z

PDB ID:

6F4Z 

Release:

2018-04-25

Title:

2'F-araG modified quadruplex with flipped G-tract and central tetrad

Classification:

DNA

Authors:

Dickerhoff, J., Weisz, K.

Citation:

Fluorine-Mediated Editing of a G-Quadruplex Folding Pathway.
Chembiochem 19 pp.927 - 930 2018

Experiment:

SOLUTION NMR

NDB ID:

5USB

PDB ID:

5USB 

Release:

2018-04-18

Title:

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (rGGTTACGGT)

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Lloyd, N.R., Wuttke, D.S.

Citation:

Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure 26 pp.722 - 733.e2 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.615Å R work:0.175R free:0.202

NDB ID:

5USN

PDB ID:

5USN 

Release:

2018-04-18

Title:

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (rGrGrUTACGGT)

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Lloyd, N.R., Wuttke, D.S.

Citation:

Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure 26 pp.722 - 733.e2 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.183R free:0.223

NDB ID:

5USO

PDB ID:

5USO 

Release:

2018-04-18

Title:

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (GGTTACrGrGrU)

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Lloyd, N.R., Wuttke, D.S.

Citation:

Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure 26 pp.722 - 733.e2 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.21R free:0.245

NDB ID:

5VFX

PDB ID:

5VFX 

Release:

2018-04-18

Title:

Structure of an accessory protein of the pCW3 relaxosome in complex with the origin of transfer (oriT) DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Traore, D.A.K., Wisniewski, J.A., Flanigan, S.F., Conroy, P.J., Panjikar, S., Mok, Y.-F., Lao, C., Griffin, M.D.W., Adams, V., Rood, J.I., Whisstock, J.C.

Citation:

Structure of an accessory protein of the pCW3 relaxosome in complex with the origin of transfer (oriT) DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.81Å R work:0.197R free:0.232

NDB ID:

5XP8

PDB ID:

5XP8 

Release:

2018-04-18

Title:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand

Classification:

DNA BINDING PROTEIN

Authors:

Sheng, G., Gogakos, T., Wang, J., Zhao, H., Serganov, A., Juranek, S., Tuschl, T., Patel, J.D., Wang, Y.

Citation:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.214R free:0.275

NDB ID:

5XPA

PDB ID:

5XPA 

Release:

2018-04-18

Title:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 9'U10' on the target strand

Classification:

DNA BINDING PROTEIN

Authors:

Sheng, G., Gogakos, T., Wang, J., Zhao, H., Serganov, A., Juranek, S., Tuschl, T., Patel, J.D., Wang, Y.

Citation:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.215R free:0.28

NDB ID:

5XPG

PDB ID:

5XPG 

Release:

2018-04-18

Title:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 6'U7' on the target strand

Classification:

DNA BINDING PROTEIN

Authors:

Sheng, G., Gogakos, T., Wang, J., Zhao, H., Serganov, A., Juranek, S., Tuschl, T., Patel, J.D., Wang, Y.

Citation:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.202R free:0.246

NDB ID:

5Y3J

PDB ID:

5Y3J 

Release:

2018-04-18

Title:

Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and TCGCAC DNA)

Classification:

IMMUNE SYSTEM

Authors:

Ohto, U., Ishida, H., Shibata, T., Sato, R., Miyake, K., Shimizu, T.

Citation:

Toll-like Receptor 9 Contains Two DNA Binding Sites that Function Cooperatively to Promote Receptor Dimerization and Activation
Immunity 48 pp.649 - 658.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.81Å R work:0.177R free:0.206

NDB ID:

5Y3K

PDB ID:

5Y3K 

Release:

2018-04-18

Title:

Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and GCGCAC DNA)

Classification:

IMMUNE SYSTEM

Authors:

Ohto, U., Ishida, H., Shibata, T., Sato, R., Miyake, K., Shimizu, T.

Citation:

Toll-like Receptor 9 Contains Two DNA Binding Sites that Function Cooperatively to Promote Receptor Dimerization and Activation
Immunity 48 pp.649 - 658.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.205R free:0.245

NDB ID:

5Y3L

PDB ID:

5Y3L 

Release:

2018-04-18

Title:

Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and CCGCAC DNA)

Classification:

IMMUNE SYSTEM

Authors:

Ohto, U., Ishida, H., Shibata, T., Sato, R., Miyake, K., Shimizu, T.

Citation:

Toll-like Receptor 9 Contains Two DNA Binding Sites that Function Cooperatively to Promote Receptor Dimerization and Activation
Immunity 48 pp.649 - 658.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.211R free:0.259

NDB ID:

5Y3M

PDB ID:

5Y3M 

Release:

2018-04-18

Title:

Crystal structure of bovine TLR9 in complex with two DNAs (CpG DNA and TCGTTT DNA)

Classification:

IMMUNE SYSTEM

Authors:

Ohto, U., Ishida, H., Shibata, T., Sato, R., Miyake, K., Shimizu, T.

Citation:

Toll-like Receptor 9 Contains Two DNA Binding Sites that Function Cooperatively to Promote Receptor Dimerization and Activation
Immunity 48 pp.649 - 658.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.225R free:0.244

NDB ID:

5ZEV

PDB ID:

5ZEV 

Release:

2018-04-18

Title:

Solution structure of G-quadruplex formed in vegfr-2 proximal promoter sequence

Classification:

DNA

Authors:

Liu, Y., Cao, C.

Citation:

A putative G-quadruplex structure in the proximal promoter of vegfr-2 has implications for drug design to inhibit tumor angiogenesis
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6BWY

PDB ID:

6BWY 

Release:

2018-04-18

Title:

DNA substrate selection by APOBEC3G

Classification:

HYDROLASE

Authors:

Ziegler, S.J., Liu, C., Landau, M., Buzovetsky, O., Desimmie, B.A., Zhao, Q., Sasaki, T., Burdick, R.C., Pathak, V.K., Anderson, K.S., Xiong, Y.

Citation:

Insights into DNA substrate selection by APOBEC3G from structural, biochemical, and functional studies.
PLoS ONE 13 pp.e0195048 - e0195048 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.233R free:0.286

NDB ID:

6FAS

PDB ID:

6FAS 

Release:

2018-04-18

Title:

Crystal structure of VAL1 B3 domain in complex with cognate DNA

Classification:

DNA BINDING PROTEIN

Authors:

Sasnauskas, G., Kauneckaite, K., Siksnys, V.

Citation:

Structural basis of DNA target recognition by the B3 domain of Arabidopsis epigenome reader VAL1.
Nucleic Acids Res. 46 pp.4316 - 4324 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.169R free:0.216

NDB ID:

6FTU

PDB ID:

6FTU 

Release:

2018-04-18

Title:

Structure of a Quadruplex forming sequence from D. discoideum

Classification:

DNA

Authors:

Guedin, A., Lin, L.Y., Armane, S., Lacroix, L., Mergny, J.L., Thore, S., Yatsunyk, L.A.

Citation:

Quadruplexes in 'Dicty': crystal structure of a four-quartet G-quadruplex formed by G-rich motif found in the Dictyostelium discoideum genome.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.217R free:0.287

NDB ID:

5NYS

PDB ID:

5NYS 

Release:

2018-04-11

Title:

M2 G-quadruplex dilute solution

Classification:

DNA

Authors:

Trajkovski, M., Endoh, T., Tateishi-Karimata, H., Ohyama, T., Tanaka, S., Plavec, J., Sugimoto, N.

Citation:

Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res. 46 pp.4301 - 4315 2018

Experiment:

SOLUTION NMR

NDB ID:

5NYT

PDB ID:

5NYT 

Release:

2018-04-11

Title:

M2 G-quadruplex 20 wt% ethylene glycol

Classification:

DNA

Authors:

Trajkovski, M., Endoh, T., Tateishi-Karimata, H., Ohyama, T., Tanaka, S., Plavec, J., Sugimoto, N.

Citation:

Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res. 46 pp.4301 - 4315 2018

Experiment:

SOLUTION NMR

NDB ID:

5NYU

PDB ID:

5NYU 

Release:

2018-04-11

Title:

M2 G-quadruplex 10 wt% PEG8000

Classification:

DNA

Authors:

Trajkovski, M., Endoh, T., Tateishi-Karimata, H., Ohyama, T., Tanaka, S., Plavec, J., Sugimoto, N.

Citation:

Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res. 46 pp.4301 - 4315 2018

Experiment:

SOLUTION NMR

NDB ID:

5ZLD

PDB ID:

5ZLD 

Release:

2018-04-11

Title:

SOLUTION NMR STRUCTURE OF A 14-MER DOUBLE STRANDED DNA DUPLEX CGCGAAATTTCGCG

Classification:

DNA

Authors:

Ganguly, S., Basu, G.

Citation:

SOLUTION NMR STRUCTURE OF A 14-MER DOUBLE STRANDED DNA DUPLEX
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5VMU

PDB ID:

5VMU 

Release:

2018-04-04

Title:

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Classification:

TRANSCRIPTION/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso.
Biochemistry 57 pp.2109 - 2120 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.346Å R work:0.178R free:0.216

NDB ID:

5VMV

PDB ID:

5VMV 

Release:

2018-04-04

Title:

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with its double CpG-methylated DNA consensus binding site

Classification:

TRANSCRIPTION/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso.
Biochemistry 57 pp.2109 - 2120 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.313Å R work:0.202R free:0.246

NDB ID:

5VMW

PDB ID:

5VMW 

Release:

2018-04-04

Title:

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Classification:

TRANSCRIPTION/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso.
Biochemistry 57 pp.2109 - 2120 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.397Å R work:0.176R free:0.216

NDB ID:

5VMX

PDB ID:

5VMX 

Release:

2018-04-04

Title:

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Classification:

TRANSCRIPTION/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso.
Biochemistry 57 pp.2109 - 2120 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.162R free:0.187

NDB ID:

5VMY

PDB ID:

5VMY 

Release:

2018-04-04

Title:

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Classification:

Transcription/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso.
Biochemistry 57 pp.2109 - 2120 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.002Å R work:0.163R free:0.188

NDB ID:

5VMZ

PDB ID:

5VMZ 

Release:

2018-04-04

Title:

Kaiso (ZBTB33) E535Q mutant zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS)

Classification:

TRANSCRIPTION/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso.
Biochemistry 57 pp.2109 - 2120 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.319Å R work:0.167R free:0.198

NDB ID:

5Z2T

PDB ID:

5Z2T 

Release:

2018-04-04

Title:

Crystal structure of DNA-bound DUX4-HD2

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Dong, X., Zhang, W., Wu, H., Huang, J., Zhang, M., Wang, P., Zhang, H., Chen, Z., Chen, S.J., Meng, G.

Citation:

Structural basis of DUX4/IGH-driven transactivation.
Leukemia pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.623Å R work:0.276R free:0.299

NDB ID:

6CC8

PDB ID:

6CC8 

Release:

2018-04-04

Title:

Crystal structure MBD3 MBD domain in complex with methylated CpG DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, K., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J.

Citation:

Crystal structure MBD3 MBD domain in complex with methylated CpG DNA
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.95Å R work:0.224R free:0.259