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As of 19-Jan-2022 number of released structures: 11891
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 8135  Download results as an excel file       Gallery view

NDB ID:

7EL3

PDB ID:

7EL3 

Release:

2022-01-19

Title:

Crystal structure of HpaR-DNA complex from Acinetobacter baumannii

Classification:

DNA BINDING PROTEIN

Authors:

Permsirivisarn, P., Yuenyao, A., Pramanpol, N., Charoenwattanasatien, R., Suginta, W., Chaiyen, P., Pakotiprapha, D.

Citation:

Mechanism of transcription regulation by Acinetobacter baumannii HpaR in the catabolism of p-hydroxyphenylacetate.
Febs J. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.164R free:0.192

NDB ID:

7KSU

PDB ID:

7KSU 

Release:

2022-01-19

Title:

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (4min)

Classification:

REPLICATION/DNA

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide.
Nat Commun 12 pp.2059 - 2059 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.173R free:0.191

NDB ID:

7KSZ

PDB ID:

7KSZ 

Release:

2022-01-19

Title:

DNA Polymerase Mu, dGTP:At Pre-Catalytic Ground State Ternary Complex, 10 mM Ca2+ (960min)

Classification:

REPLICATION/DNA

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide.
Nat Commun 12 pp.2059 - 2059 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.417Å R work:0.157R free:0.174

NDB ID:

7KT0

PDB ID:

7KT0 

Release:

2022-01-19

Title:

DNA Polymerase Mu, dGTP:At Ground State Ternary Complex, 50 mM Mg2+ (60min)

Classification:

REPLICATION/DNA

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide.
Nat Commun 12 pp.2059 - 2059 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.36Å R work:0.161R free:0.178

NDB ID:

7KT1

PDB ID:

7KT1 

Release:

2022-01-19

Title:

DNA Polymerase Mu, dGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (180min)

Classification:

REPLICATION/DNA

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide.
Nat Commun 12 pp.2059 - 2059 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.665Å R work:0.164R free:0.188

NDB ID:

7KT2

PDB ID:

7KT2 

Release:

2022-01-19

Title:

DNA Polymerase Mu, dGTP:At Product State Ternary Complex, 50 mM Mn2+ (225min)

Classification:

REPLICATION/DNA

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

Watching a double strand break repair polymerase insert a pro-mutagenic oxidized nucleotide.
Nat Commun 12 pp.2059 - 2059 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.499Å R work:0.167R free:0.188

NDB ID:

7LBW

PDB ID:

7LBW 

Release:

2022-01-19

Title:

Crystal structure of TFAM (mitochondrial transcription factor A) bridging two non-sequence specific DNA substrates

Classification:

TRANSCRIPTION/DNA

Authors:

Choi, W.S., Garcia-Diaz, M.

Citation:

A minimal motif for sequence recognition by mitochondrial transcription factor A (TFAM).
Nucleic Acids Res. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.84Å R work:0.198R free:0.232

NDB ID:

7LBX

PDB ID:

7LBX 

Release:

2022-01-19

Title:

Crystal structure of TFAM (mitochondrial transcription factor A) in complex with LSP

Classification:

TRANSCRIPTION/DNA

Authors:

Choi, W.S., Garcia-Diaz, M.

Citation:

A minimal motif for sequence recognition by mitochondrial transcription factor A (TFAM).
Nucleic Acids Res. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.208R free:0.241

NDB ID:

7RQ5

PDB ID:

7RQ5 

Release:

2022-01-19

Title:

Hairpin near 3'-Splice Site of Influenza A Segment 7 Bound to 5-nt Oligonucleotide

Classification:

RNA

Authors:

Kauffmann, A.D., Kennedy, S.D., Moss, W.N., Kierzek, E., Kierzek, R., Turner, D.H.

Citation:

Nuclear Magnetic Resonance reveals a two hairpin equilibrium near the 3'-splice site of Influenza A segment 7 mRNA that can be shifted by oligonucleotides.
Rna pp. - 2022

Experiment:

SOLUTION NMR

NDB ID:

7W0X

PDB ID:

7W0X 

Release:

2022-01-19

Title:

Tetrameric antiparallel G-quadruplex formed by natural human telomeric sequence

Classification:

DNA

Authors:

Zhang, N., Jing, H.T., Fu, W.Q.

Citation:

NMR structure of an alternating antiparallel tetrameric G-quadruplex assembled by the single-repeat of human telomeric DNA d(GGGTTA)
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7W9N

PDB ID:

7W9N 

Release:

2022-01-19

Title:

THE STRUCTURE OF OBA33-OTA COMPLEX

Classification:

DNA

Authors:

Xu, G.H., Zhao, J.J., Li, C.G., Liu, M.L.

Citation:

THE NMR STRUCTURE OF OBA33-OTA COMPLEX
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7BCB

PDB ID:

7BCB 

Release:

2022-01-12

Title:

Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid bound to IR3 DNA

Classification:

DNA BINDING PROTEIN

Authors:

Fernandez-Lopez, R., Boer, D.R., Moncalian, G.

Citation:

Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid bound to a direct-repeat DNA element
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.232R free:0.28

NDB ID:

7DJU

PDB ID:

7DJU 

Release:

2022-01-12

Title:

NMR solution structure of the 1:1 complex of a platinum(II) compound bound to 5'-end of Myc1234 G-quadruplex reveals the mechanism of conformational switch and dynamic binding of G-quadruplex

Classification:

DNA

Authors:

Liu, W., Mao, Z.W.

Citation:

Structure polymorphism and dynamics of G-quadruplex transition regulated by a ligand
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7DJV

PDB ID:

7DJV 

Release:

2022-01-12

Title:

NMR solution structure of the 2:1 complex of a platinum(II) compound bound to Myc1234 G-quadruplex reveals the mechanism of conformational switch and dynamic binding of G-quadruplex

Classification:

DNA

Authors:

Liu, W., Mao, Z.W.

Citation:

Structure polymorphism and dynamics of G-quadruplex transition regulated by a ligand
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7DJW

PDB ID:

7DJW 

Release:

2022-01-12

Title:

NMR solution structure of the 1:1 complex of a platinum(II) compound bound to 3'-end of Myc1234 G-quadruplex reveals the mechanism of conformational switch and dynamic binding of G-quadruplex

Classification:

DNA

Authors:

Liu, W., Mao, Z.W.

Citation:

Structure polymorphism and dynamics of G-quadruplex transition regulated by a ligand
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7RIL

PDB ID:

7RIL 

Release:

2022-01-12

Title:

Crystal structure of hairpin polyamide Py-Im 1 bound to 5' CCTGACCAGG

Classification:

DNA

Authors:

Oh, J., Wang, D.

Citation:

Transcription treadmill: pyrrole-imidazole polyamide induces inhibition of transcription elongation in RNA polymerase II
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.203R free:0.228

NDB ID:

7RIM

PDB ID:

7RIM 

Release:

2022-01-12

Title:

RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Oh, J., Wang, D.

Citation:

Transcription treadmill: pyrrole-imidazole polyamide induces inhibition of transcription elongation in RNA polymerase II
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.215R free:0.25

NDB ID:

7RIP

PDB ID:

7RIP 

Release:

2022-01-12

Title:

RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Oh, J., Wang, D.

Citation:

Transcription treadmill: pyrrole-imidazole polyamide induces inhibition of transcription elongation in RNA polymerase II
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.218R free:0.26

NDB ID:

7RIQ

PDB ID:

7RIQ 

Release:

2022-01-12

Title:

RNA polymerase II elongation complex scaffold 1 without polyamide

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Oh, J., Wang, D.

Citation:

Transcription treadmill: pyrrole-imidazole polyamide induces inhibition of transcription elongation in RNA polymerase II
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.213R free:0.264

NDB ID:

7RIW

PDB ID:

7RIW 

Release:

2022-01-12

Title:

RNA polymerase II elongation complex scaffold 2, without polyamide

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Oh, J., Wang, D.

Citation:

Transcription treadmill: pyrrole-imidazole polyamide induces inhibition of transcription elongation in RNA polymerase II
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.227R free:0.264

NDB ID:

7RIX

PDB ID:

7RIX 

Release:

2022-01-12

Title:

RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Oh, J., Wang, D.

Citation:

Transcription treadmill: pyrrole-imidazole polyamide induces inhibition of transcription elongation in RNA polymerase II
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.222R free:0.268

NDB ID:

7RIY

PDB ID:

7RIY 

Release:

2022-01-12

Title:

RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 soaked with UTP

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Oh, J., Wang, D.

Citation:

Transcription treadmill: pyrrole-imidazole polyamide induces inhibition of transcription elongation in RNA polymerase II
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.231R free:0.28

NDB ID:

7KSP

PDB ID:

7KSP 

Release:

2022-01-05

Title:

Crystal structure of hSAMD9_DBD with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Peng, S., Pathak, P., Xiang, Y., Deng, J.

Citation:

Crystal structure of hSAMD9_AlbA domain with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.208R free:0.284

NDB ID:

7L69

PDB ID:

7L69 

Release:

2022-01-05

Title:

Crystal structure of human polymerase eta complexed with syn N7-benzylguanine

Classification:

REPLICATION

Authors:

Jung, H., Lee, S.

Citation:

Crystal structure of human polymerase eta complexed with syn N7-benzylguanine
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.91Å R work:0.186R free:0.223

NDB ID:

7DQ0

PDB ID:

7DQ0 

Release:

2021-12-29

Title:

Crystal structure of actinomycin D-echinomycin-d(ACGTGCT/AGCTCGT) complex

Classification:

ANTIBIOTIC/DNA

Authors:

Satange, R.B., Hou, M.H.

Citation:

Crystal structure of actinomycin D-echinomycin-d(ACGTGCT/AGCTCGT) complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.231R free:0.249

NDB ID:

7DQ8

PDB ID:

7DQ8 

Release:

2021-12-29

Title:

Crystal structure of actinomycin D-echinomycin-d(ACGCGCT/AGCTCGT) complex

Classification:

ANTIBIOTIC/DNA

Authors:

Satange, R.B., Hou, M.H.

Citation:

Crystal structure of actinomycin D-echinomycin-d(ACGCGCT/AGCTCGT) complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.266R free:0.28

NDB ID:

7FEF

PDB ID:

7FEF 

Release:

2021-12-29

Title:

Crystal structure of AtMBD6 with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Wu, Z.B., Liu, K., Min, J.R.

Citation:

Crystal structure of AtMBD6 with DNA
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.39Å R work:0.223R free:0.253

NDB ID:

7FHJ

PDB ID:

7FHJ 

Release:

2021-12-29

Title:

Crystal structure of BAZ2A with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chen, S., Zhou, M., Dong, A., Loppnau, P., Wang, M., Min, J., Liu, K.

Citation:

Structural basis of the TAM domain of BAZ2A in binding to DNA or RNA independent of methylation status.
J.Biol.Chem. 297 pp.101351 - 101351 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.28Å R work:0.218R free:0.246

NDB ID:

7PNE

PDB ID:

7PNE 

Release:

2021-12-29

Title:

Parallel Q-D hybrid with 3' duplex stem-loop as a lateral snapback loop

Classification:

DNA

Authors:

Vianney, Y.M., Weisz, K.

Citation:

Indoloquinoline Ligands Favor Intercalation at Quadruplex-Duplex Interfaces.
Chemistry pp.e202103718 - e202103718 2021

Experiment:

SOLUTION NMR

NDB ID:

7PNG

PDB ID:

7PNG 

Release:

2021-12-29

Title:

Solution structure of 1:1 complex of an indoloquinoline derivative SYUIQ-5 to parallel quadruplex-duplex (Q-D) hybrid

Classification:

DNA

Authors:

Vianney, Y.M., Weisz, K.

Citation:

Indoloquinoline Ligands Favor Intercalation at Quadruplex-Duplex Interfaces.
Chemistry pp.e202103718 - e202103718 2021

Experiment:

SOLUTION NMR

NDB ID:

7DPE

PDB ID:

7DPE 

Release:

2021-12-22

Title:

RNA methyltransferase METTL4

Classification:

TRANSFERASE/DNA

Authors:

Luo, Q., Ma, J.B.

Citation:

Structure of RNA m6A methyltransferase METTL4 in complex with DNA at 2.75 Angstroms resolutioon
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.751Å R work:0.21R free:0.261

NDB ID:

7DV2

PDB ID:

7DV2 

Release:

2021-12-22

Title:

Structure of Sulfolobus solfataricus SegB-DNA complex

Classification:

DNA BINDING PROTEIN

Authors:

Yen, C.Y., Lin, M.G., Chen, B.W., Ng, I.W., Read, N., Kabli, A.F., Wu, C.T., Shen, Y.Y., Chen, C.H., Barilla, D., Sun, Y.J., Hsiao, C.D.

Citation:

Chromosome segregation in Archaea: SegA- and SegB-DNA complex structures provide insights into segrosome assembly.
Nucleic Acids Res. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.229R free:0.276

NDB ID:

7DWR

PDB ID:

7DWR 

Release:

2021-12-22

Title:

Structure of Sulfolobus solfataricus SegA-ADP complex bound to DNA

Classification:

DNA BINDING PROTEIN

Authors:

Yen, C.Y., Lin, M.G., Chen, B.W., Ng, I.W., Read, N., Kabli, A.F., Wu, C.T., Shen, Y.Y., Chen, C.H., Barilla, D., Sun, Y.J., Hsiao, C.D.

Citation:

Chromosome segregation in Archaea: SegA- and SegB-DNA complex structures provide insights into segrosome assembly.
Nucleic Acids Res. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.238R free:0.298

NDB ID:

7T6Y

PDB ID:

7T6Y 

Release:

2021-12-22

Title:

d((CGA)5TGA) parallel-stranded homo-duplex

Classification:

DNA

Authors:

Luteran, E.M., Paukstelis, P.J.

Citation:

The parallel-stranded d(CGA) duplex is a highly predictable structural motif with two conformationally distinct strands
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.203R free:0.241

NDB ID:

7CRE

PDB ID:

7CRE 

Release:

2021-12-15

Title:

hnRNPK KH3 domain in complex with a ssDNA fragment from the SIRLOIN element

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yao, J., Tu, Y., Shen, C., Zhou, Q., Xiao, H., Jia, D., Sun, Q.

Citation:

Nuclear import receptors and hnRNPK mediates nuclear import and stress granule localization of SIRLOIN.
Cell.Mol.Life Sci. 78 pp.7617 - 7633 2021

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.257R free:0.279

NDB ID:

7EL7

PDB ID:

7EL7 

Release:

2021-12-15

Title:

NMR solution structure of the 1:1 complex of a quadruplex-duplex hybrid MYT1L and a platinum(II) ligand L1Pt(dien)

Classification:

DNA

Authors:

Liu, L.-Y., Liu, W., Mao, Z.-W.

Citation:

NMR solution structure of the 1:1 complex of a quadruplex-duplex hybrid MYT1L and a platinum(II) ligand L1Pt(dien)
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7KT3

PDB ID:

7KT3 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:At Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.879Å R work:0.159R free:0.187

NDB ID:

7KT4

PDB ID:

7KT4 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:At Reaction State Ternary Complex, 10 mM Mn2+ (30min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Reaction State Ternary Complex, 10 mM Mn2+ (30min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.922Å R work:0.166R free:0.203

NDB ID:

7KT5

PDB ID:

7KT5 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mn2+ (120min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mn2+ (120min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.46Å R work:0.161R free:0.182

NDB ID:

7KT6

PDB ID:

7KT6 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mn2+ (960min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mn2+ (960min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.87Å R work:0.165R free:0.193

NDB ID:

7KT7

PDB ID:

7KT7 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (60min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (60min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.76Å R work:0.161R free:0.186

NDB ID:

7KT8

PDB ID:

7KT8 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 50 mM Mg2+ (180min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 50 mM Mg2+ (180min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.701Å R work:0.168R free:0.191

NDB ID:

7KT9

PDB ID:

7KT9 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 50 mM Mg2+ (960min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 50 mM Mg2+ (960min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.482Å R work:0.155R free:0.175

NDB ID:

7KTA

PDB ID:

7KTA 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:Ct Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:Ct Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.844Å R work:0.167R free:0.198

NDB ID:

7KTE

PDB ID:

7KTE 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:Ct Reaction State Ternary Complex, 50 mM Mg2+ (90min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:Ct Reaction State Ternary Complex, 50 mM Mg2+ (90min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.479Å R work:0.156R free:0.177

NDB ID:

7KTF

PDB ID:

7KTF 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mg2+ (180min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mg2+ (180min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.489Å R work:0.167R free:0.187

NDB ID:

7KTG

PDB ID:

7KTG 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mg2+ (960min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mg2+ (960min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.445Å R work:0.157R free:0.182

NDB ID:

7KTN

PDB ID:

7KTN 

Release:

2021-12-15

Title:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mg2+ (2160min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mg2+ (2160min)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.33Å R work:0.141R free:0.162

NDB ID:

7KWL

PDB ID:

7KWL 

Release:

2021-12-15

Title:

Deoxyuridine in DNA Structure: Solution Structure of [d(CGUGAATTCGCG)]2

Classification:

DNA

Authors:

Meints, G.A., Ljunggren, K.D.

Citation:

Single Base Lesions and Mismatches Alter the Backbone Dynamics and Conformational Properties in DNA
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7KWR

PDB ID:

7KWR 

Release:

2021-12-15

Title:

1,N6-ethenoadnine (E) in dsDNA sequence (5'-CGCGEATTCGCG-3')

Classification:

DNA

Authors:

Meints, G.A., Ljunggren, K.D.

Citation:

Single Base Lesions and Mismatches Alter the Backbone Dynamics and Conformational Properties in DNA
To Be Published pp. - 0

Experiment:

SOLUTION NMR