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As of 21-Feb-2018 number of released structures: 9351
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6301  Download results as an excel file       Gallery view

NDB ID:

6C1A

PDB ID:

6C1A 

Release:

2018-02-14

Title:

MBD2 in complex with methylated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, K., Xu, C., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Citation:

MBD2 in complex with methylated DNA
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.23R free:0.265

NDB ID:

6C1T

PDB ID:

6C1T 

Release:

2018-02-14

Title:

MBD2 in complex with a partially methylated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lei, M., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium

Citation:

MBD2 in complex with a hemimethylated deoxy-oligonucleotide
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.84Å R work:0.213R free:0.246

NDB ID:

6C1U

PDB ID:

6C1U 

Release:

2018-02-14

Title:

MBD2 in complex with a deoxy-oligonucleotide

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lei, M., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium

Citation:

MBD2 in complex with a deoxy-oligonucleotide
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.231R free:0.271

NDB ID:

6C1V

PDB ID:

6C1V 

Release:

2018-02-14

Title:

MBD2 in complex with double-stranded DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lei, M., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium

Citation:

MBD2 in complex with double-stranded DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.232R free:0.267

NDB ID:

6C1Y

PDB ID:

6C1Y 

Release:

2018-02-14

Title:

mbd of human mecp2 in complex with methylated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, K., Bian, C., Tempel, W., Wernimont, A.K., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium

Citation:

mbd of human mecp2 in complex with methylated DNA
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.23R free:0.285

NDB ID:

6C2E

PDB ID:

6C2E 

Release:

2018-02-14

Title:

MBD2 in complex with methylated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, K., Xu, C., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium

Citation:

MBD2 in complex with methylated DNA
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.151Å R work:0.209R free:0.232

NDB ID:

6C2F

PDB ID:

6C2F 

Release:

2018-02-14

Title:

MBD2 in complex with methylated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, K., Xu, C., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium

Citation:

MBD2 in complex with methylated DNA
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.211R free:0.242

NDB ID:

6C2K

PDB ID:

6C2K 

Release:

2018-02-14

Title:

Crystal structure of MBD2 complex with methylated CpG island

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Bian, C., Tempel, W., Xu, C., Wernimont, A.K., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Citation:

Crystal structure of MBD2 complex with methylated CpG island
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.196R free:0.223

NDB ID:

5XN0

PDB ID:

5XN0 

Release:

2018-02-07

Title:

HIV-1 reverse transcriptase Q151M:DNA binary complex

Classification:

TRANSFERASE/DNA

Authors:

Yasutake, Y., Hattori, S.I., Hayashi, H., Matsuda, K., Tamura, N., Kohgo, S., Maeda, K., Mitsuya, H.

Citation:

HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir.
Sci Rep 8 pp.1624 - 1624 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.596Å R work:0.184R free:0.226

NDB ID:

5XN1

PDB ID:

5XN1 

Release:

2018-02-07

Title:

HIV-1 reverse transcriptase Q151M:DNA:entecavir-triphosphate ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Yasutake, Y., Hattori, S.I., Hayashi, H., Matsuda, K., Tamura, N., Kohgo, S., Maeda, K., Mitsuya, H.

Citation:

HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir.
Sci Rep 8 pp.1624 - 1624 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.446Å R work:0.188R free:0.227

NDB ID:

5XN2

PDB ID:

5XN2 

Release:

2018-02-07

Title:

HIV-1 reverse transcriptase Q151M:DNA:dGTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Yasutake, Y., Hattori, S.I., Hayashi, H., Matsuda, K., Tamura, N., Kohgo, S., Maeda, K., Mitsuya, H.

Citation:

HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir.
Sci Rep 8 pp.1624 - 1624 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.381Å R work:0.188R free:0.223

NDB ID:

6BZ1

PDB ID:

6BZ1 

Release:

2018-02-07

Title:

MEF2 Chimera D83V mutant/DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

Lei, X., Chen, L.

Citation:

The cancer mutation D83V induces an a-helix to b-strand conformation switch in MEF2B
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.97Å R work:0.138R free:0.189

NDB ID:

5YX2

PDB ID:

5YX2 

Release:

2018-01-31

Title:

Crystal structure of DNMT3A-DNMT3L in complex with DNA containing two CpG sites

Classification:

TRANSFERASE/TRANSFERASE REGULATOR/DNA

Authors:

Zhang, Z.M., Lu, R., Wang, P., Yu, Y., Chen, D., Gao, L., Liu, S., Ji, D., Rothbart, S.B., Wang, Y., Wang, G., Song, J.

Citation:

Structural basis for DNMT3A-mediated de novo DNA methylation
Nature pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.653Å R work:0.19R free:0.221

NDB ID:

6ASF

PDB ID:

6ASF 

Release:

2018-01-31

Title:

NMR and Restrained Molecular Dynamics Determination of the Structure of an Aza-Benzimidazole Derivative Complex with the DNA Minor Groove of an -AAGATA- Sequence

Classification:

DNA

Authors:

Harika, N.K., Germann, M.W., Wilson, W.D.

Citation:

First Structure of a Designed Minor Groove Binding Heterocyclic Cation that Specifically Recognizes Mixed DNA Base Pair Sequences.
Chemistry 23 pp.17612 - 17620 2017

Experiment:

SOLUTION NMR

NDB ID:

6AST

PDB ID:

6AST 

Release:

2018-01-31

Title:

NMR and Restrained Molecular Dynamics Determination of the Structure of an Aza-Benzimidazole Derivative Complex with the DNA Minor Groove of an -AAGATA Sequence

Classification:

DNA

Authors:

Harika, N.K., Germann, M.W., Wilson, W.D.

Citation:

First Structure of a Designed Minor Groove Binding Heterocyclic Cation that Specifically Recognizes Mixed DNA Base Pair Sequences.
Chemistry 23 pp.17612 - 17620 2017

Experiment:

SOLUTION NMR

NDB ID:

6BRR

PDB ID:

6BRR 

Release:

2018-01-31

Title:

Crystal structure of DNMT3A (R836A)-DNMT3L in complex with DNA containing two CpG sites

Classification:

TRANSFERASE/DNA

Authors:

Zhang, Z.M., Song, J.

Citation:

Crystal structure of DNMT3A (R836A)-DNMT3L in complex with DNA containing two CpG sites
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.97Å R work:0.198R free:0.241

NDB ID:

6BYY

PDB ID:

6BYY 

Release:

2018-01-31

Title:

MEF2 CHIMERA/DNA Complex

Classification:

TRANSCRIPTION/DNA

Authors:

Lei, X., Chen, L.

Citation:

The cancer mutation D83V induces an a-helix to b-strand conformation switch in MEF2B
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.213R free:0.265

NDB ID:

6C2J

PDB ID:

6C2J 

Release:

2018-01-31

Title:

Bacteriophage N4 RNA polymerase II and DNA complex

Classification:

transcription/dna

Authors:

Molodtsov, V., Murakami, K.S.

Citation:

TBA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.188R free:0.213

NDB ID:

6C2L

PDB ID:

6C2L 

Release:

2018-01-31

Title:

Bacteriophage N4 RNA polymerase II elongation complex 1

Classification:

transcription/dna/rna

Authors:

Molodtsov, V., Murakami, K.S.

Citation:

TBA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.189R free:0.244

NDB ID:

6C2P

PDB ID:

6C2P 

Release:

2018-01-31

Title:

Bacteriophage N4 RNA polymerase II elongation complex 2

Classification:

transcription/dna/rna

Authors:

Molodtsov, V., Murakami, K.S.

Citation:

TBA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.19R free:0.221

NDB ID:

6F57

PDB ID:

6F57 

Release:

2018-01-31

Title:

Crystal structure of DNMT3A-DNMT3L in complex with single CpG-containing DNA

Classification:

transferase/DNA

Authors:

Zhang, Z.M., Lu, R., Wang, P., Yu, Y., Chen, D., Gao, L., Liu, S., Ji, D., Rothbart, S.B., Wang, Y., Wang, G.G., Song, J.

Citation:

Structural basis for DNMT3A-mediated de novo DNA methylation.
Nature pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.098Å R work:0.21R free:0.242

NDB ID:

5XM8

PDB ID:

5XM8 

Release:

2018-01-24

Title:

Crystal structure of AsfvPolX in complex with DNA enzyme and Pb.

Classification:

TRANSFERASE/DNA

Authors:

Liu, H., Yu, X., Chen, Y., Zhang, J., Wu, B., Zheng, L., Haruehanroengra, P., Wang, R., Li, S., Lin, J., Li, J., Sheng, J., Huang, Z., Ma, J., Gan, J.

Citation:

Crystal structure of an RNA-cleaving DNAzyme.
Nat Commun 8 pp.2006 - 2006 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.235R free:0.282

NDB ID:

5XM9

PDB ID:

5XM9 

Release:

2018-01-24

Title:

Crystal structure of AsfvPolX in complex with DNA enzyme.

Classification:

TRANSFERASE/DNA

Authors:

Liu, H., Yu, X., Chen, Y., Zhang, J., Wu, B., Zheng, L., Haruehanroengra, P., Wang, R., Li, S., Lin, J., Li, J., Sheng, J., Huang, Z., Ma, J., Gan, J.

Citation:

Crystal structure of an RNA-cleaving DNAzyme.
Nat Commun 8 pp.2006 - 2006 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.053Å R work:0.215R free:0.277

NDB ID:

5XMA

PDB ID:

5XMA 

Release:

2018-01-24

Title:

Crystal structure of AsfvPolX in complex with DNA enzyme at P43212 space group

Classification:

TRANSFERASE/DNA

Authors:

Liu, H., Yu, X., Chen, Y., Zhang, J., Wu, B., Zheng, L., Haruehanroengra, P., Wang, R., Li, S., Lin, J., Li, J., Sheng, J., Huang, Z., Ma, J., Gan, J.

Citation:

Crystal structure of an RNA-cleaving DNAzyme.
Nat Commun 8 pp.2006 - 2006 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.8Å R work:0.258R free:0.285

NDB ID:

5LQH

PDB ID:

5LQH 

Release:

2018-01-17

Title:

A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0

Classification:

DNA

Authors:

Wang, B., Galer, P., Sket, P., Plavec, J.

Citation:

Ammonium ion as a probe to asses the kinetics of structural changes upon de/protonation of G-quadruplexes
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5LS8

PDB ID:

5LS8 

Release:

2018-01-17

Title:

Light-activated ruthenium complex bound to a DNA quadruplex

Classification:

DNA

Authors:

McQuaid, K.T., Abell, H., Brazier, J., Cardin, C.J., Hall, J.P.

Citation:

Chiral recognition of a DNA quadruplex by a light-activated ruthenium complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.78Å R work:0.214R free:0.232

NDB ID:

5MPF

PDB ID:

5MPF 

Release:

2018-01-17

Title:

Structural Basis of Gene Regulation by the Grainyhead Transcription Factor Superfamily

Classification:

TRANSCRIPTION

Authors:

Ming, Q., Roske, Y., Schuetz, A., Walentin, K., Ibraimi, I., Schmidt-Ott, K.M., Heinemann, U.

Citation:

Structural basis of gene regulation by the Grainyhead/CP2 transcription factor family.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.918Å R work:0.228R free:0.276

NDB ID:

5XXP

PDB ID:

5XXP 

Release:

2018-01-17

Title:

Crystal structure of CbnR_DBD-DNA complex

Classification:

DNA BINDING PROTEIN

Authors:

Koentjoro, M.P., Adachi, N., Senda, M., Ogawa, N., Senda, T.

Citation:

Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region
FEBS J. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.219R free:0.263

NDB ID:

5NW9

PDB ID:

5NW9 

Release:

2018-01-10

Title:

Crystal structure of the complex of Tdp1 with duplex DNA

Classification:

HYDROLASE

Authors:

Flett, F.J., Ruksenaite, E., Armstrong, L.A., Bharati, S., Carloni, R., Morris, E.R., Mackay, C.L., Interthal, H., Richardson, J.M.

Citation:

Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun 9 pp.24 - 24 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.04Å R work:0.231R free:0.27

NDB ID:

5NWA

PDB ID:

5NWA 

Release:

2018-01-10

Title:

Crystal structure of the complex of Tdp1 with duplex DNA

Classification:

HYDROLASE

Authors:

Flett, F.J., Ruksenaite, E., Armstrong, L.A., Bharati, S., Carloni, R., Morris, E.R., Mackay, C.L., Interthal, H., Richardson, J.M.

Citation:

Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun 9 pp.24 - 24 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.25R free:0.305

NDB ID:

6B0O

PDB ID:

6B0O 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet TGT

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.552Å R work:0.192R free:0.206

NDB ID:

6B0P

PDB ID:

6B0P 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet GGT

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.077Å R work:0.187R free:0.226

NDB ID:

6B0Q

PDB ID:

6B0Q 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT

Classification:

Transcription/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.794Å R work:0.225R free:0.24

NDB ID:

6B0R

PDB ID:

6B0R 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(-KTS form) with M342R Mutation and 14+1mer Oligonucleotide with 3' Triplet TGG

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.818Å R work:0.207R free:0.233

NDB ID:

6BLW

PDB ID:

6BLW 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(+KTS form) with M342R Mutation and 17+1mer Oligonucleotide with Triplet GGT

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.835Å R work:0.222R free:0.246

NDB ID:

6BSG

PDB ID:

6BSG 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with RNA/DNA hybrid in an RNA hydrolysis-off mode

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.44Å R work:0.19R free:0.224

NDB ID:

6BSH

PDB ID:

6BSH 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with RNA/DNA hybrid in the RNA hydrolysis mode

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.649Å R work:0.189R free:0.227

NDB ID:

6BSI

PDB ID:

6BSI 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with an RNA/DNA hybrid containing the polypurine-tract sequence

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.192R free:0.24

NDB ID:

6BSJ

PDB ID:

6BSJ 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with an RNA/DNA hybrid sequence non-preferred for RNA hydrolysis

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.89Å R work:0.2R free:0.25

NDB ID:

5O6E

PDB ID:

5O6E 

Release:

2017-12-20

Title:

Structure of ScPif1 in complex with TTTGGGTT and ADP-AlF4

Classification:

HYDROLASE

Authors:

Lu, K.Y., Chen, W.F., Rety, S., Liu, N.N., Wu, W.Q., Dai, Y.X., Li, D., Ma, H.Y., Dou, S.X., Xi, X.G.

Citation:

Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.345Å R work:0.178R free:0.256

NDB ID:

5ODF

PDB ID:

5ODF 

Release:

2017-12-20

Title:

NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies

Classification:

DNA BINDING PROTEIN

Authors:

Padroni, G., Parkinson, J.A., Fox, K.R., Burley, G.A.

Citation:

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Nucleic Acids Res. 46 pp.42 - 53 2018

Experiment:

SOLUTION NMR

NDB ID:

5OMF

PDB ID:

5OMF 

Release:

2017-12-20

Title:

Closed, ternary structure of KOD DNA polymerase

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Betz, K., Wirth, J., Diederichs, K., Marx, A.

Citation:

Crystal structures of ternary complexes of archaeal B-family DNA polymerases.
PLoS ONE 12 pp.e0188005 - e0188005 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.092Å R work:0.195R free:0.233

NDB ID:

5OMQ

PDB ID:

5OMQ 

Release:

2017-12-20

Title:

Ternary complex of 9N DNA polymerase in the replicative state with three metal ions in the active site

Classification:

TRANSFERASE

Authors:

Kropp, H.M., Betz, K., Wirth, J., Diederichs, K., Marx, A.

Citation:

Crystal structures of ternary complexes of archaeal B-family DNA polymerases.
PLoS ONE 12 pp.e0188005 - e0188005 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.199Å R work:0.193R free:0.248

NDB ID:

5OMV

PDB ID:

5OMV 

Release:

2017-12-20

Title:

Ternary complex of 9N DNA polymerase in the replicative state with two metal ions in the active site

Classification:

TRANSFERASE

Authors:

Kropp, H.M., Betz, K., Wirth, J., Diederichs, K., Marx, A.

Citation:

Crystal structures of ternary complexes of archaeal B-family DNA polymerases.
PLoS ONE 12 pp.e0188005 - e0188005 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.003Å R work:0.189R free:0.233

NDB ID:

5UA2

PDB ID:

5UA2 

Release:

2017-12-20

Title:

Mycobacterium tuberculosis KstR in complex with a 26-bp DNA operator

Classification:

Transcription/DNA

Authors:

Ho, N.A.T., Dawes, S.S., Baker, E.N., Lott, J.S.

Citation:

Crystal structure of KstR in complex with cognate DNA operator
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9002Å R work:0.229R free:0.255

NDB ID:

6BST

PDB ID:

6BST 

Release:

2017-12-20

Title:

CRYSTAL STRUCTURE OF Z-DNA WITH UNTYPICALLY COORDINATED CA2+ ION

Classification:

DNA

Authors:

Luo, Z., Dauter, Z.

Citation:

The crystal structure of Z-DNA with untypically coordinated Ca2+ ions.
J. Biol. Inorg. Chem. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.12R free:0.172

NDB ID:

5O6B

PDB ID:

5O6B 

Release:

2017-12-13

Title:

Structure of ScPif1 in complex with GGGTTTT and ADP-AlF4

Classification:

HYDROLASE

Authors:

Lu, K.Y., Chen, W.F., Rety, S., Liu, N.N., Wu, W.Q., Dai, Y.X., Li, D., Ma, H.Y., Dou, S.X., Xi, X.G.

Citation:

Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.029Å R work:0.192R free:0.237

NDB ID:

5O6D

PDB ID:

5O6D 

Release:

2017-12-13

Title:

Structure of ScPif1 in complex with polydT and ATPgS

Classification:

HYDROLASE

Authors:

Lu, K.Y., Chen, W.F., Rety, S., Liu, N.N., Wu, W.Q., Dai, Y.X., Li, D., Ma, H.Y., Dou, S.X., Xi, X.G.

Citation:

Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.283Å R work:0.251R free:0.321

NDB ID:

5W2M

PDB ID:

5W2M 

Release:

2017-12-13

Title:

APOBEC3F Catalytic Domain Complex with a Single-Stranded DNA

Classification:

DNA BINDING PROTEIN

Authors:

Fang, Y., Xiao, X., Li, S.X., Wolfe, A., Chen, X.S.

Citation:

Molecular Interactions of a DNA Modifying Enzyme APOBEC3F Catalytic Domain with a Single-Stranded DNA.
J. Mol. Biol. 430 pp.87 - 101 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.249R free:0.266

NDB ID:

6F58

PDB ID:

6F58 

Release:

2017-12-13

Title:

Crystal structure of human Brachyury (T) in complex with DNA

Classification:

TRANSCRIPTION

Authors:

Newman, J.A., Gavard, A.E., Krojer, T., Shrestha, L., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Citation:

Crystal structure of human Brachyury (T) in complex with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.253Å R work:0.242R free:0.287