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As of 17-Jan-2018 number of released structures: 9301
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6277  Download results as an excel file       Gallery view

NDB ID:

5LQH

PDB ID:

5LQH 

Release:

2018-01-17

Title:

A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0

Classification:

DNA

Authors:

Wang, B., Galer, P., Sket, P., Plavec, J.

Citation:

Ammonium ion as a probe to asses the kinetics of structural changes upon de/protonation of G-quadruplexes
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5LS8

PDB ID:

5LS8 

Release:

2018-01-17

Title:

Light-activated ruthenium complex bound to a DNA quadruplex

Classification:

DNA

Authors:

McQuaid, K.T., Abell, H., Brazier, J., Cardin, C.J., Hall, J.P.

Citation:

Chiral recognition of a DNA quadruplex by a light-activated ruthenium complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.78Å R work:0.214R free:0.232

NDB ID:

5MPF

PDB ID:

5MPF 

Release:

2018-01-17

Title:

Structural Basis of Gene Regulation by the Grainyhead Transcription Factor Superfamily

Classification:

TRANSCRIPTION

Authors:

Ming, Q., Roske, Y., Schuetz, A., Walentin, K., Ibraimi, I., Schmidt-Ott, K.M., Heinemann, U.

Citation:

Structural basis of gene regulation by the Grainyhead/CP2 transcription factor family.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.918Å R work:0.228R free:0.276

NDB ID:

5XXP

PDB ID:

5XXP 

Release:

2018-01-17

Title:

Crystal structure of CbnR_DBD-DNA complex

Classification:

DNA BINDING PROTEIN

Authors:

Koentjoro, M.P., Adachi, N., Senda, M., Senda, T., Ogawa, N.

Citation:

Crystal structure of DNA binding domain of CbnR in complex with DNA
Febs J. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.219R free:0.263

NDB ID:

5NW9

PDB ID:

5NW9 

Release:

2018-01-10

Title:

Crystal structure of the complex of Tdp1 with duplex DNA

Classification:

HYDROLASE

Authors:

Flett, F.J., Ruksenaite, E., Armstrong, L.A., Bharati, S., Carloni, R., Morris, E.R., Mackay, C.L., Interthal, H., Richardson, J.M.

Citation:

Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun 9 pp.24 - 24 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.04Å R work:0.231R free:0.27

NDB ID:

5NWA

PDB ID:

5NWA 

Release:

2018-01-10

Title:

Crystal structure of the complex of Tdp1 with duplex DNA

Classification:

HYDROLASE

Authors:

Flett, F.J., Ruksenaite, E., Armstrong, L.A., Bharati, S., Carloni, R., Morris, E.R., Mackay, C.L., Interthal, H., Richardson, J.M.

Citation:

Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun 9 pp.24 - 24 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.25R free:0.305

NDB ID:

6B0O

PDB ID:

6B0O 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet TGT

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.552Å R work:0.192R free:0.206

NDB ID:

6B0P

PDB ID:

6B0P 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet GGT

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.077Å R work:0.187R free:0.226

NDB ID:

6B0Q

PDB ID:

6B0Q 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT

Classification:

Transcription/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.794Å R work:0.225R free:0.24

NDB ID:

6B0R

PDB ID:

6B0R 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(-KTS form) with M342R Mutation and 14+1mer Oligonucleotide with 3' Triplet TGG

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.818Å R work:0.207R free:0.233

NDB ID:

6BLW

PDB ID:

6BLW 

Release:

2018-01-03

Title:

Zinc finger Domain of WT1(+KTS form) with M342R Mutation and 17+1mer Oligonucleotide with Triplet GGT

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Wang, D., Horton, J.R., Zheng, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.835Å R work:0.222R free:0.246

NDB ID:

6BSG

PDB ID:

6BSG 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with RNA/DNA hybrid in an RNA hydrolysis-off mode

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.44Å R work:0.19R free:0.224

NDB ID:

6BSH

PDB ID:

6BSH 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with RNA/DNA hybrid in the RNA hydrolysis mode

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.649Å R work:0.189R free:0.227

NDB ID:

6BSI

PDB ID:

6BSI 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with an RNA/DNA hybrid containing the polypurine-tract sequence

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.192R free:0.24

NDB ID:

6BSJ

PDB ID:

6BSJ 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with an RNA/DNA hybrid sequence non-preferred for RNA hydrolysis

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.89Å R work:0.2R free:0.25

NDB ID:

5O6E

PDB ID:

5O6E 

Release:

2017-12-20

Title:

Structure of ScPif1 in complex with TTTGGGTT and ADP-AlF4

Classification:

HYDROLASE

Authors:

Lu, K.Y., Chen, W.F., Rety, S., Liu, N.N., Wu, W.Q., Dai, Y.X., Li, D., Ma, H.Y., Dou, S.X., Xi, X.G.

Citation:

Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.345Å R work:0.178R free:0.256

NDB ID:

5ODF

PDB ID:

5ODF 

Release:

2017-12-20

Title:

NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies

Classification:

DNA BINDING PROTEIN

Authors:

Padroni, G., Parkinson, J.A., Fox, K.R., Burley, G.A.

Citation:

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Nucleic Acids Res. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5OMF

PDB ID:

5OMF 

Release:

2017-12-20

Title:

Closed, ternary structure of KOD DNA polymerase

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Betz, K., Wirth, J., Diederichs, K., Marx, A.

Citation:

Crystal structures of ternary complexes of archaeal B-family DNA polymerases.
PLoS ONE 12 pp.e0188005 - e0188005 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.092Å R work:0.195R free:0.233

NDB ID:

5OMQ

PDB ID:

5OMQ 

Release:

2017-12-20

Title:

Ternary complex of 9N DNA polymerase in the replicative state with three metal ions in the active site

Classification:

TRANSFERASE

Authors:

Kropp, H.M., Betz, K., Wirth, J., Diederichs, K., Marx, A.

Citation:

Crystal structures of ternary complexes of archaeal B-family DNA polymerases.
PLoS ONE 12 pp.e0188005 - e0188005 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.199Å R work:0.193R free:0.248

NDB ID:

5OMV

PDB ID:

5OMV 

Release:

2017-12-20

Title:

Ternary complex of 9N DNA polymerase in the replicative state with two metal ions in the active site

Classification:

TRANSFERASE

Authors:

Kropp, H.M., Betz, K., Wirth, J., Diederichs, K., Marx, A.

Citation:

Crystal structures of ternary complexes of archaeal B-family DNA polymerases.
PLoS ONE 12 pp.e0188005 - e0188005 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.003Å R work:0.189R free:0.233

NDB ID:

5UA2

PDB ID:

5UA2 

Release:

2017-12-20

Title:

Mycobacterium tuberculosis KstR in complex with a 26-bp DNA operator

Classification:

Transcription/DNA

Authors:

Ho, N.A.T., Dawes, S.S., Baker, E.N., Lott, J.S.

Citation:

Crystal structure of KstR in complex with cognate DNA operator
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9002Å R work:0.229R free:0.255

NDB ID:

6BST

PDB ID:

6BST 

Release:

2017-12-20

Title:

CRYSTAL STRUCTURE OF Z-DNA WITH UNTYPICALLY COORDINATED CA2+ ION

Classification:

DNA

Authors:

Luo, Z., Dauter, Z.

Citation:

The crystal structure of Z-DNA with untypically coordinated Ca2+ ions.
J. Biol. Inorg. Chem. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.12R free:0.172

NDB ID:

5O6B

PDB ID:

5O6B 

Release:

2017-12-13

Title:

Structure of ScPif1 in complex with GGGTTTT and ADP-AlF4

Classification:

HYDROLASE

Authors:

Lu, K.Y., Chen, W.F., Rety, S., Liu, N.N., Wu, W.Q., Dai, Y.X., Li, D., Ma, H.Y., Dou, S.X., Xi, X.G.

Citation:

Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.029Å R work:0.192R free:0.237

NDB ID:

5O6D

PDB ID:

5O6D 

Release:

2017-12-13

Title:

Structure of ScPif1 in complex with polydT and ATPgS

Classification:

HYDROLASE

Authors:

Lu, K.Y., Chen, W.F., Rety, S., Liu, N.N., Wu, W.Q., Dai, Y.X., Li, D., Ma, H.Y., Dou, S.X., Xi, X.G.

Citation:

Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.283Å R work:0.251R free:0.321

NDB ID:

5W2M

PDB ID:

5W2M 

Release:

2017-12-13

Title:

APOBEC3F Catalytic Domain Complex with a Single-Stranded DNA

Classification:

DNA BINDING PROTEIN

Authors:

Fang, Y., Xiao, X., Li, S.X., Wolfe, A., Chen, X.S.

Citation:

Molecular Interactions of a DNA Modifying Enzyme APOBEC3F Catalytic Domain with a Single-Stranded DNA.
J. Mol. Biol. 430 pp.87 - 101 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.249R free:0.266

NDB ID:

6F58

PDB ID:

6F58 

Release:

2017-12-13

Title:

Crystal structure of human Brachyury (T) in complex with DNA

Classification:

TRANSCRIPTION

Authors:

Newman, J.A., Gavard, A.E., Krojer, T., Shrestha, L., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Citation:

Crystal structure of human Brachyury (T) in complex with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.253Å R work:0.242R free:0.287

NDB ID:

6F59

PDB ID:

6F59 

Release:

2017-12-13

Title:

Crystal structure of human Brachyury (T) G177D variant in complex with DNA

Classification:

TRANSCRIPTION

Authors:

Newman, J.A., Gavard, A.E., Krojer, T., Shrestha, L., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Citation:

Crystal structure of human Brachyury (T) G177D variant in complex with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.151Å R work:0.221R free:0.252

NDB ID:

5O6G

PDB ID:

5O6G 

Release:

2017-12-06

Title:

Structures and dynamics of mesophilic variants from the homing endonuclease I-DmoI

Classification:

DNA BINDING PROTEIN

Authors:

Alba, J., Marcaida, M.J., Prieto, J., Montoya, G., Molina, R., D'Abramo, M.

Citation:

Structure and dynamics of mesophilic variants from the homing endonuclease I-DmoI.
J. Comput. Aided Mol. Des. 31 pp.1063 - 1072 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.177R free:0.232

NDB ID:

5O6I

PDB ID:

5O6I 

Release:

2017-12-06

Title:

Structures and dynamics of mesophilic variants from the homing endonuclease I-DmoI

Classification:

DNA BINDING PROTEIN

Authors:

Alba, J., Marcaida, M.J., Prieto, J., Montoya, G., Molina, R., D'Abramo, M.

Citation:

Structure and dynamics of mesophilic variants from the homing endonuclease I-DmoI.
J. Comput. Aided Mol. Des. 31 pp.1063 - 1072 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.196R free:0.227

NDB ID:

5OCZ

PDB ID:

5OCZ 

Release:

2017-12-06

Title:

Free DNA_hairpin polyamides studies

Classification:

DNA

Authors:

Padroni, G., Parkinson, J.A., Fox, K.R., Burley, G.A.

Citation:

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Nucleic Acids Res. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5ODM

PDB ID:

5ODM 

Release:

2017-12-06

Title:

NtiPr polyamide in complex with 5'CGATGTACTACG3

Classification:

DNA

Authors:

Padroni, G., Parkinson, J.A., Fox, K.R., Burley, G.A.

Citation:

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Nucleic Acids Res. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5OE1

PDB ID:

5OE1 

Release:

2017-12-06

Title:

Im polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies

Classification:

DNA

Authors:

Padroni, G., Parkinson, J.A., Fox, K.R., Burley, G.A.

Citation:

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Nucleic Acids Res. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5V9X

PDB ID:

5V9X 

Release:

2017-12-06

Title:

Structure of Mycobacterium smegmatis helicase Lhr bound to ssDNA and AMP-PNP

Classification:

HYDROLASE/DNA

Authors:

Ejaz, A., Ordonez, H., Jacewicz, A., Ferrao, R., Shuman, S.

Citation:

Structure of mycobacterial 3'-to-5' RNA:DNA helicase Lhr bound to a ssDNA tracking strand highlights distinctive features of a novel family of bacterial helicases.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.797Å R work:0.195R free:0.242

NDB ID:

5VU6

PDB ID:

5VU6 

Release:

2017-12-06

Title:

TNA polymerase binary complex with primer/template duplex

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Shi, C., Sau, S.P., Nikoomanzar, A., Chaput, J.C.

Citation:

Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun 8 pp.1810 - 1810 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.235R free:0.282

NDB ID:

5VU7

PDB ID:

5VU7 

Release:

2017-12-06

Title:

TNA polymerase, open ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Shi, C., Sau, S.P., Nikoomanzar, A., Chaput, J.C.

Citation:

Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun 8 pp.1810 - 1810 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.72Å R work:0.214R free:0.267

NDB ID:

5VU8

PDB ID:

5VU8 

Release:

2017-12-06

Title:

TNA polymerase, closed ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Shi, C., Sau, S.P., Nikoomanzar, A., Chaput, J.C.

Citation:

Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun 8 pp.1810 - 1810 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.257R free:0.294

NDB ID:

5VU9

PDB ID:

5VU9 

Release:

2017-12-06

Title:

TNA polymerase, translocated product

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Shi, C., Sau, S.P., Nikoomanzar, A., Chaput, J.C.

Citation:

Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun 8 pp.1810 - 1810 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.19R free:0.235

NDB ID:

5XJZ

PDB ID:

5XJZ 

Release:

2017-12-06

Title:

Structure of DNA1-Ag complex

Classification:

DNA

Authors:

Liu, H.H., Shen, F.S., Haruehanroengra, P., Yao, Q.Q., Cheng, Y.S., Chen, Y.Q., Yang, C., Zhang, J., Wu, B.X., Luo, Q., Cui, R.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs
Angew. Chem. Int. Ed. Engl. 56 pp.9430 - 9434 2017

Experiment:

X-RAY DIFFRACTION Resolution:0.98Å R work:0.123R free:0.13

NDB ID:

5XK0

PDB ID:

5XK0 

Release:

2017-12-06

Title:

Structure of 8-mer DNA2

Classification:

DNA

Authors:

Liu, H.H., Shen, F.S., Haruehanroengra, P., Yao, Q.Q., Cheng, Y.S., Chen, Y.Q., Yang, C., Zhang, J., Wu, B.X., Luo, Q., Cui, R.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs
Angew. Chem. Int. Ed. Engl. 56 pp.9430 - 9434 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.451Å R work:0.18R free:0.195

NDB ID:

5XK1

PDB ID:

5XK1 

Release:

2017-12-06

Title:

Structure of 8-mer DNA3

Classification:

DNA

Authors:

Liu, H.H., Shen, F.S., Haruehanroengra, P., Yao, Q.Q., Cheng, Y.S., Chen, Y.Q., Yang, C., Zhang, J., Wu, B.X., Luo, Q., Cui, R.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs.
Angew. Chem. Int. Ed. Engl. 56 pp.9430 - 9434 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.501Å R work:0.162R free:0.195

NDB ID:

5YI2

PDB ID:

5YI2 

Release:

2017-12-06

Title:

Structure of Lactococcus lactis ZitR, wild type in complex with DNA

Classification:

METAL BINDING PROTEIN

Authors:

Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.

Citation:

Structure of Lactococcus lactis ZitR
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.191R free:0.246

NDB ID:

5YI3

PDB ID:

5YI3 

Release:

2017-12-06

Title:

Structure of Lactococcus lactis ZitR, C30S mutant in complex with DNA

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.

Citation:

Structure of Lactococcus lactis ZitR
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.205R free:0.262

NDB ID:

5YJ3

PDB ID:

5YJ3 

Release:

2017-12-06

Title:

Crystal structure of TZAP and telomeric DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhao, Y., Zhang, G., He, C., Mei, Y., Shi, Y., Li, F.

Citation:

The 11th C2H2 zinc finger and an adjacent C-terminal arm are responsible for TZAP recognition of telomeric DNA.
Cell Res. 28 pp.130 - 134 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.845Å R work:0.226R free:0.267

NDB ID:

5O7T

PDB ID:

5O7T 

Release:

2017-11-29

Title:

Crystal structure of KlenTaq mutant M747K in a closed ternary complex with a dG:dCTP base pair

Classification:

TRANSFERASE

Authors:

Betz, K., Nilforoushan, A., Wyss, L.A., Diederichs, K., Sturla, S.J., Marx, A.

Citation:

Structural basis for the selective incorporation of an artificial nucleotide opposite a DNA adduct by a DNA polymerase.
Chem. Commun. (Camb.) 53 pp.12704 - 12707 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.176R free:0.234

NDB ID:

5OGA

PDB ID:

5OGA 

Release:

2017-11-29

Title:

Structure of minimal i-motif domain

Classification:

DNA

Authors:

Mir, B., Serrano, I., Buitrago, D., Orozco, M., Escaja, N., Gonzalez, C.

Citation:

Prevalent Sequences in the Human Genome Can Form Mini i-Motif Structures at Physiological pH.
J. Am. Chem. Soc. 139 pp.13985 - 13988 2017

Experiment:

SOLUTION NMR

NDB ID:

5OXJ

PDB ID:

5OXJ 

Release:

2017-11-29

Title:

Crystal structure of KlenTaq mutant M747K in a closed ternary complex with a O6-MeG:BenziTP base pair

Classification:

TRANSFERASE

Authors:

Betz, K., Nilforoushan, A., Wyss, L.A., Diederichs, K., Sturla, S.J., Marx, A.

Citation:

Structural basis for the selective incorporation of an artificial nucleotide opposite a DNA adduct by a DNA polymerase.
Chem. Commun. (Camb.) 53 pp.12704 - 12707 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.196R free:0.257

NDB ID:

5U0Q

PDB ID:

5U0Q 

Release:

2017-11-29

Title:

RNA-DNA heptamer duplex with one 2'-5'-linkage

Classification:

RNA, DNA

Authors:

Luo, Z., Sheng, J., Wang, R.

Citation:

RNA-DNA heptamer duplex with one 2'-5'-linkage
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.43Å R work:0.152R free:0.176

NDB ID:

5YBB

PDB ID:

5YBB 

Release:

2017-11-29

Title:

Structural basis underlying complex assembly andconformational transition of the type I R-M system

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, Y.P., Tang, Q., Zhang, J.Z., Tian, L.F., Gao, P., Yan, X.X.

Citation:

Structural basis underlying complex assembly and conformational transition of the type I R-M system.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.11151 - 11156 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.235R free:0.271

NDB ID:

5YEF

PDB ID:

5YEF 

Release:

2017-11-29

Title:

Crystal structure of CTCF ZFs2-8-Hs5-1aE

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yin, M., Wang, J., Wang, M., Li, X., Zhang, M., Wu, Q., Wang, Y.

Citation:

Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites
Cell Res. 27 pp.1365 - 1377 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.807Å R work:0.223R free:0.253

NDB ID:

5YEG

PDB ID:

5YEG 

Release:

2017-11-29

Title:

Crystal structure of CTCF ZFs4-8-Hs5-1a complex

Classification:

DNA BINDING PROTEIN

Authors:

Yin, M., Wang, J., Wang, M., Li, X., Zhang, M., Wu, Q., Wang, Y.

Citation:

Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites
Cell Res. 27 pp.1365 - 1377 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.186R free:0.204