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As of 22-Mar-2017 number of released structures: 8770
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5897  Download results as an excel file       Gallery view

NDB ID:

5IP3

PDB ID:

5IP3 

Release:

2017-03-22

Title:

Tomato spotted wilt tospovirus nucleocapsid protein-ssDNA complex

Classification:

Viral protein/DNA

Authors:

Komoda, K., Narita, M., Yamashita, K., Tanaka, I., Yao, M.

Citation:

Crystal structure of TSWV nucleocapsid protein
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.25R free:0.291

NDB ID:

5X6G

PDB ID:

5X6G 

Release:

2017-03-15

Title:

Crystal Structure of SMAD5-MH1/palindromic SBE DNA complex

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Chai, N., Li, W.X., Wang, J., Wang, Z.X., Yang, S.M., Wu, J.W.

Citation:

Structural basis for the Smad5 MH1 domain to recognize different DNA sequences.
Nucleic Acids Res. 43 pp.9051 - 9064 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.222R free:0.255

NDB ID:

5X6H

PDB ID:

5X6H 

Release:

2017-03-15

Title:

Crystal Structure of SMAD5-MH1/GC-BRE DNA complex

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Chai, N., Li, W.X., Wang, J., Wang, Z.X., Yang, S.M., Wu, J.W.

Citation:

Structural basis for the Smad5 MH1 domain to recognize different DNA sequences.
Nucleic Acids Res. 43 pp.9051 - 9064 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.201R free:0.231

NDB ID:

5X6M

PDB ID:

5X6M 

Release:

2017-03-15

Title:

Crystal Structure of SMAD5-MH1 in complex with a composite DNA sequence

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Chai, N., Li, W.X., Wang, J., Wang, Z.X., Yang, S.M., Wu, J.W.

Citation:

Structural basis for the Smad5 MH1 domain to recognize different DNA sequences.
Nucleic Acids Res. 43 pp.9051 - 9064 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.21R free:0.252

NDB ID:

5T5A

PDB ID:

5T5A 

Release:

2017-03-08

Title:

Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom

Classification:

RNA

Authors:

Liu, Y., Wilson, T.J., Lilley, D.M.

Citation:

The structure of a nucleolytic ribozyme that employs a catalytic metal ion.
Nat. Chem. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.169R free:0.217

NDB ID:

2NBJ

PDB ID:

2NBJ 

Release:

2017-03-01

Title:

DNA-archeal MC1 protein complex structure by NMR

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Paquet, F., Loth, K., Landon, C.

Citation:

First 3D structure of an atypical protein-DNA complex
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5GPC

PDB ID:

5GPC 

Release:

2017-03-01

Title:

Structural analysis of fatty acid degradation regulator FadR from Bacillus halodurans

Classification:

TRANSCRIPTION, DNA BINDING PROTEIN/DNA

Authors:

Yeo, H.K., Park, Y.W., Lee, J.Y.

Citation:

Structural basis of operator sites recognition and effector binding in the TetR family transcription regulator FadR.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.204R free:0.265

NDB ID:

5M1W

PDB ID:

5M1W 

Release:

2017-03-01

Title:

Structure of a stable G-hairpin

Classification:

DNA

Authors:

Gajarsky, M., Lenarcic Zivkovic, M., Stadlbauer, P., Pagano, B., Fiala, R., Amato, J., Tomaska, L., Sponer, J., Plavec, J., Trantirek, L.

Citation:

Structure of a stable G-hairpin.
J. Am. Chem. Soc. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5SZX

PDB ID:

5SZX 

Release:

2017-03-01

Title:

Epstein-Barr virus Zta DNA binding domain homodimer in complex with methylated DNA

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Hong, S., Wang, D., Horton, J.R., Zhang, X., Speck, S.H., Blumenthal, R.M., Cheng, X.

Citation:

Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.251Å R work:0.259R free:0.284

NDB ID:

5T01

PDB ID:

5T01 

Release:

2017-03-01

Title:

Human c-Jun DNA binding domain homodimer in complex with methylated DNA

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Hong, S., Wang, D., Horton, J.R., Zhang, X., Speck, S.H., Blumenthal, R.M., Cheng, X.

Citation:

Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.89Å R work:0.193R free:0.227

NDB ID:

5B7J

PDB ID:

5B7J 

Release:

2017-02-22

Title:

Structure model of Sap1-DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Wu, L., Guan, L., He, P., Yang, F., Zhang, Y., Hu, Y., Ding, J., Hua, Y., Zhang, Y., Ye, Q., Hu, J., Wang, T., Jin, C., Kong, D.

Citation:

Sap1 is a replication initiation factor essential for the assembly of pre-replicative complex in the fission yeast Schizosaccharomyces pombe
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5I4S

PDB ID:

5I4S 

Release:

2017-02-22

Title:

Non-natural DNA pair Z (6-amino-5-nitro-2[1H] pyridone heterocycle)-Guanosine

Classification:

DNA

Authors:

Ahmad Sobri, A.F., Brady, R.L.

Citation:

Non-natural DNA pair Z (6-amino-5-nitro-2[1H] pyridone heterocycle)-Guanosine
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.46Å R work:0.206R free:0.267

NDB ID:

5ITH

PDB ID:

5ITH 

Release:

2017-02-22

Title:

TIA-1 RRM2 recognition of target oligonucleotide

Classification:

rna binding protein/dna

Authors:

Waris, S., Garcia-Maurino, S.M., Sivakumaran, A., Beckham, S.A., Loughlin, F.E., Gorospe, M., Diaz-Moreno, I., Wilce, M.C., Wilce, J.A.

Citation:

TIA-1 RRM23 binding and recognition of target oligonucleotides.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.31Å R work:0.227R free:0.26

NDB ID:

5UI5

PDB ID:

5UI5 

Release:

2017-02-22

Title:

Crystal structure of Aquifex aeolicus sigmaN bound to promoter DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Campbell, E.A., Kamath, S., Rajashankar, K.R., Wu, M., Darst, S.A.

Citation:

Crystal structure of Aquifex aeolicus sigma (N) bound to promoter DNA and the structure of sigma (N)-holoenzyme.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E1805 - E1814 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.289R free:0.335

NDB ID:

5B1L

PDB ID:

5B1L 

Release:

2017-02-15

Title:

The mouse nucleosome structure containing H3t

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Ueda, J., Harada, A., Urahama, T., Machida, S., Maehara, K., Hada, M., Makino, Y., Nogami, J., Horikoshi, N., Osakabe, A., Taguchi, H., Tanaka, H., Tachiwana, H., Yao, T., Yamada, M., Iwamoto, T., Isotani, A., Ikawa, M., Tachibana, T., Okada, Y., Kimura, H., Ohkawa, Y., Kurumizaka, H., Yamagata, K.

Citation:

Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis
Cell Rep 18 pp.593 - 600 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.196R free:0.242

NDB ID:

5B1M

PDB ID:

5B1M 

Release:

2017-02-15

Title:

The mouse nucleosome structure containing H3.1

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Ueda, J., Harada, A., Urahama, T., Machida, S., Maehara, K., Hada, M., Makino, Y., Nogami, J., Horikoshi, N., Osakabe, A., Taguchi, H., Tanaka, H., Tachiwana, H., Yao, T., Yamada, M., Iwamoto, T., Isotani, A., Ikawa, M., Tachibana, T., Okada, Y., Kimura, H., Ohkawa, Y., Kurumizaka, H., Yamagata, K.

Citation:

Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis
Cell Rep 18 pp.593 - 600 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.34Å R work:0.211R free:0.259

NDB ID:

5GSU

PDB ID:

5GSU 

Release:

2017-02-15

Title:

Crystal structure of nucleosome core particle consisting of human testis-specific histone variants, Th2A and Th2B

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Padavattan, S., Thiruselvam, V., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.

Citation:

Structural analyses of the nucleosome complexes with human testis-specific histone variants, hTh2a and hTh2b
Biophys. Chem. 221 pp.41 - 48 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.256

NDB ID:

5GT0

PDB ID:

5GT0 

Release:

2017-02-15

Title:

Crystal structure of nucleosome complex with human testis-specific histone variants, Th2a

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Padavattan, S., Thiruselvam, V., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.

Citation:

Structural analyses of the nucleosome complexes with human testis-specific histone variants, hTh2a and hTh2b
Biophys. Chem. 221 pp.41 - 48 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.82Å R work:0.209R free:0.28

NDB ID:

5GT3

PDB ID:

5GT3 

Release:

2017-02-15

Title:

Crystal structure of nucleosome particle in the presence of human testis-specific histone variant, hTh2b

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Padavattan, S., Thiruselvam, V., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.

Citation:

Structural analyses of the nucleosome complexes with human testis-specific histone variants, hTh2a and hTh2b
Biophys. Chem. 221 pp.41 - 48 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.91Å R work:0.2R free:0.257

NDB ID:

5LFS

PDB ID:

5LFS 

Release:

2017-02-15

Title:

Lambda-[Ru(bpy)2(dppz)]2+ bound to brominated DNA

Classification:

DNA

Authors:

Hall, J.P., Gurung, S.P., Henle, J., Poidl, P., Andersson, J., Lincoln, P., Winter, G., Sorensen, T., Cardin, D.J., Brazier, J.A., Cardin, C.J.

Citation:

Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.
Chemistry pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.17R free:0.192

NDB ID:

5LFW

PDB ID:

5LFW 

Release:

2017-02-15

Title:

Lambda-[Ru(phen)2(dppz)]2+ bound to a short substituted DNA sequence

Classification:

DNA

Authors:

Hall, J.P., Gurung, S.P., Henle, J., Poidl, P., Andersson, J., Lincoln, P., Winter, G., Sorensen, T., Cardin, D.J., Brazier, J.A., Cardin, C.J.

Citation:

Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.
Chemistry pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.28Å R work:0.14R free:0.171

NDB ID:

5LFX

PDB ID:

5LFX 

Release:

2017-02-15

Title:

Lambda-[Ru(phen)2(dppz-11,12-Me)]2+ bound to a short substituted DNA sequence

Classification:

DNA

Authors:

Hall, J.P., Gurung, S.P., Henle, J., Poidl, P., Andersson, J., Lincoln, P., Winter, G., Sorensen, T., Cardin, D.J., Brazier, J.A., Cardin, C.J.

Citation:

Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.
Chemistry pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.56Å R work:0.143R free:0.191

NDB ID:

5E69

PDB ID:

5E69 

Release:

2017-02-08

Title:

Glucocorticoid receptor DNA binding domain - IL8 NF-kB response element complex

Classification:

dna binding protein/dna

Authors:

Hudson, W.H., Rye, E.A., Nwachukwu, J.C., de Vera, I.M., Herbst, A.G., Kojetin, D.J., Nettles, K.W., Ortlund, E.A.

Citation:

Cryptic glucocorticoid receptor binding sites pervade genomic NF-kB response elements
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.219R free:0.241

NDB ID:

5E6A

PDB ID:

5E6A 

Release:

2017-02-08

Title:

Glucocorticoid receptor DNA binding domain - PLAU NF-kB response element complex

Classification:

dna binding protein/dna

Authors:

Hudson, W.H., Rye, E.A., Nwachukwu, J.C., de Vera, I.M., Herbst, A.G., Kojetin, D.J., Nettles, K.W., Ortlund, E.A.

Citation:

Cryptic glucocorticoid receptor binding sites pervade genomic NF-kB response elements
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.197Å R work:0.236R free:0.265

NDB ID:

5E6B

PDB ID:

5E6B 

Release:

2017-02-08

Title:

Glucocorticoid receptor DNA binding domain - RELB NF-kB response element complex

Classification:

dna binding protein/dna

Authors:

Hudson, W.H., Rye, E.A., Nwachukwu, J.C., de Vera, I.M., Herbst, A.G., Kojetin, D.J., Nettles, K.W., Ortlund, E.A.

Citation:

Cryptic glucocorticoid receptor binding sites pervade genomic NF-kB response elements
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.203R free:0.227

NDB ID:

5E6C

PDB ID:

5E6C 

Release:

2017-02-08

Title:

Glucocorticoid receptor DNA binding domain - CCL2 NF-kB response element complex

Classification:

dna binding protein/dna

Authors:

Hudson, W.H., Rye, E.A., Nwachukwu, J.C., de Vera, I.M., Herbst, A.G., Kojetin, D.J., Nettles, K.W., Ortlund, E.A.

Citation:

Cryptic glucocorticoid receptor binding sites pervade genomic NF-kB response elements
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.233R free:0.27

NDB ID:

5E6D

PDB ID:

5E6D 

Release:

2017-02-08

Title:

Glucocorticoid receptor DNA binding domain - ICAM1 NF-kB response element complex

Classification:

dna binding protein/dna

Authors:

Hudson, W.H., Rye, E.A., Nwachukwu, J.C., de Vera, I.M., Herbst, A.G., Kojetin, D.J., Nettles, K.W., Ortlund, E.A.

Citation:

Cryptic glucocorticoid receptor binding sites pervade genomic NF-kB response elements
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.256R free:0.283

NDB ID:

5EF6

PDB ID:

5EF6 

Release:

2017-02-08

Title:

Structure of HOXB13 complex with methylated DNA

Classification:

TRANSCRIPTION

Authors:

Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.

Citation:

Molecular basis of recognition of two distinct DNA sequences by a single transcription factor
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.29R free:0.319

NDB ID:

5G5T

PDB ID:

5G5T 

Release:

2017-02-08

Title:

Structure of the Argonaute protein from Methanocaldcoccus janaschii in complex with guide DNA

Classification:

HYDROLASE/DNA

Authors:

Schneider, S., Oellig, C.A., Keegan, R., Willkomm, S., Zander, A., Grohmann, D.

Citation:

Structural Basis for Guide-Strand Recognition and Target Specificity by the Argonaute Protein of Methanocaldcoccus Janaschii
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.228R free:0.284

NDB ID:

5GSK

PDB ID:

5GSK 

Release:

2017-02-08

Title:

Crystal structure of duplex DNA3 in complex with Hg(II) and Sr(II)

Classification:

DNA

Authors:

Liu, H.H., Cai, C., Haruehanroengra, P., Yao, Q.Q., Chen, Y.Q., Yang, C., Luo, Q., Wu, B.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.05Å R work:0.14R free:0.155

NDB ID:

5JGH

PDB ID:

5JGH 

Release:

2017-02-08

Title:

Crystal structure of the mitochondrial DNA packaging protein Abf2p in complex with DNA at 2.6 Angstrom resolution

Classification:

DNA BINDING PROTEIN

Authors:

Chakraborty, A., Lyonnais, S., Battistini, F., Hospital, A., Medici, G., Prohens, R., Orozco, M., Vilardell, J., Sola, M.

Citation:

DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p.
Nucleic Acids Res. 45 pp.951 - 967 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.226R free:0.26

NDB ID:

5JH0

PDB ID:

5JH0 

Release:

2017-02-08

Title:

Crystal structure of the mitochondrial DNA packaging protein Abf2p in complex with DNA at 2.18 Angstrom resolution

Classification:

DNA BINDING PROTEIN

Authors:

Chakraborty, A., Lyonnais, S., Battistini, F., Hospital, A., Medici, G., Prohens, R., Orozco, M., Vilardell, J., Sola, M.

Citation:

DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p.
Nucleic Acids Res. 45 pp.951 - 967 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.18Å R work:0.209R free:0.236

NDB ID:

5KN8

PDB ID:

5KN8 

Release:

2017-02-08

Title:

MutY N-terminal domain in complex with undamaged DNA

Classification:

Hydrolase/DNA

Authors:

Wang, L., Chakravarthy, S., Verdine, G.L.

Citation:

Structural Basis for the Lesion-scanning Mechanism of the Bacterial MutY DNA Glycosylase.
J. Biol. Chem. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.81Å R work:0.166R free:0.219

NDB ID:

5KN9

PDB ID:

5KN9 

Release:

2017-02-08

Title:

MutY N-terminal domain in complex with DNA containing an intrahelical oxoG:A base-pair

Classification:

Hydrolase/DNA

Authors:

Wang, L., Chakravarthy, S., Verdine, G.L.

Citation:

Structural Basis for the Lesion-scanning Mechanism of the Bacterial MutY DNA Glycosylase.
J. Biol. Chem. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.93Å R work:0.168R free:0.228

NDB ID:

5U9H

PDB ID:

5U9H 

Release:

2017-02-08

Title:

DNA polymerase beta product complex with inserted Sp-isomer of dCTP-alpha-S

Classification:

TRANSFERASE/DNA

Authors:

Perera, L., Freudenthal, B.D., Beard, W.A., Pedersen, L.G., Wilson, S.H.

Citation:

Revealing the role of the product metal in DNA polymerase beta catalysis.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.194R free:0.232

NDB ID:

5WSP

PDB ID:

5WSP 

Release:

2017-02-08

Title:

Crystal structure of DNA3 duplex

Classification:

DNA

Authors:

Liu, H.H., Cai, C., Haruehanroengra, P., Yao, Q.Q., Chen, Y.Q., Yang, C., Luo, Q., Wu, B.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.502Å R work:0.184R free:0.196

NDB ID:

5WSQ

PDB ID:

5WSQ 

Release:

2017-02-08

Title:

Crystal structure of C-Hg-T pair containing DNA duplex

Classification:

DNA

Authors:

Liu, H.H., Cai, C., Haruehanroengra, P., Yao, Q.Q., Chen, Y.Q., Yang, C., Luo, Q., Wu, B.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.05Å R work:0.155R free:0.174

NDB ID:

5WSR

PDB ID:

5WSR 

Release:

2017-02-08

Title:

Crystal structure of T-Hg-T pair containing DNA duplex

Classification:

DNA

Authors:

Liu, H.H., Cai, C., Haruehanroengra, P., Yao, Q.Q., Chen, Y.Q., Yang, C., Luo, Q., Wu, B.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.167R free:0.187

NDB ID:

5WSS

PDB ID:

5WSS 

Release:

2017-02-08

Title:

Crystal structure of T-Hg-T pair containing DNA duplex in the presence Ba2+

Classification:

DNA

Authors:

Liu, H.H., Cai, C., Haruehanroengra, P., Yao, Q.Q., Chen, Y.Q., Yang, C., Luo, Q., Wu, B.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.147R free:0.193

NDB ID:

5HOD

PDB ID:

5HOD 

Release:

2017-02-01

Title:

Structure of LHX4 transcription factor complexed with DNA

Classification:

TRANSCRIPTION

Authors:

Yin, Y., Jolma, A., Zhong, F., Dave, K., Nitta, K., Kivioja, T., Yan, J., Syed, S., Morgunova, E., Vinson, C., Taipale, J.

Citation:

Impact of cytosine methylation on DNA binding specificities of human transcription factors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.682Å R work:0.233R free:0.261

NDB ID:

5HSO

PDB ID:

5HSO 

Release:

2017-02-01

Title:

Crystal structure of MYCOBACTERIUM TUBERCULOSIS MARR FAMILY PROTEIN Rv2887 complex with DNA

Classification:

TRANSCRIPTION

Authors:

Gao, Y.R., Li, D.F., Bi, L.J., Wang, D.C.

Citation:

Structural and functional analysis of the mechanism of MarR protein Rv2887 from M. tuberculosis
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.239R free:0.277

NDB ID:

5MJX

PDB ID:

5MJX 

Release:

2017-02-01

Title:

2'F-ANA/DNA Chimeric TBA Quadruplex structure

Classification:

DNA

Authors:

Lietard, J., Abou Assi, H., Gomez-Pinto, I., Gonzalez, C., Somoza, M.M., Damha, M.J.

Citation:

Mapping the affinity landscape of Thrombin-binding aptamers on 2'F-ANA/DNA chimeric G-Quadruplex microarrays.
Nucleic Acids Res. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5HLG

PDB ID:

5HLG 

Release:

2017-01-25

Title:

Structure of reduced AbfR bound to DNA

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Liu, G., Liu, X., Xu, H., Liu, X., Zhou, H., Huang, Z., Gan, J., Chen, H., Lan, L., Yang, C.G.

Citation:

Structural insights into the redox-sensing mechanism of MarR-type regulator AbfR.
J. Am. Chem. Soc. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.225R free:0.256

NDB ID:

5HLH

PDB ID:

5HLH 

Release:

2017-01-25

Title:

Crystal structure of the overoxidized AbfR bound to DNA

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Liu, G., Liu, X., Xu, H., Liu, X., Zhou, H., Huang, Z., Gan, J., Chen, H., Lan, L., Yang, C.G.

Citation:

Structural insights into the redox-sensing mechanism of MarR-type regulator AbfR.
J. Am. Chem. Soc. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.223R free:0.272

NDB ID:

5U30

PDB ID:

5U30 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-extended target DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.92Å R work:0.205R free:0.244

NDB ID:

5U31

PDB ID:

5U31 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-8mer substrate DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.89Å R work:0.197R free:0.239

NDB ID:

5U33

PDB ID:

5U33 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-extended non-target DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.75Å R work:0.245R free:0.286

NDB ID:

5HHH

PDB ID:

5HHH 

Release:

2017-01-18

Title:

Structure of human DNA polymerase beta Host-Guest complexed with the control G for N7-CBZ-platination

Classification:

TRANSFERASE, LYASE/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta Host-Guest complexed with the control G for N7-CBZ-platination
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.363Å R work:0.212R free:0.265

NDB ID:

5HHI

PDB ID:

5HHI 

Release:

2017-01-18

Title:

Structure of human DNA polymerase beta Host-Guest complexed with CBZ-platinated N7-G

Classification:

TRANSFERASE, LYASE/DNA

Authors:

Lee, S., Koag, M.-C.

Citation:

Structure of human DNA polymerase beta Host-Guest complexed with CBZ-platinated N7-G
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.517Å R work:0.222R free:0.279

NDB ID:

5HK3

PDB ID:

5HK3 

Release:

2017-01-18

Title:

Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with DNA

Classification:

hydrolase/dna

Authors:

Yen, T.J., Brennan, R.G.

Citation:

Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.56Å R work:0.191R free:0.206