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As of 18-Jul-2019 number of released structures: 10288
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6972  Download results as an excel file       Gallery view

NDB ID:

6QT1

PDB ID:

6QT1 

Release:

2019-07-17

Title:

Radiation damage study on a 16mer DNA segment, structure at 0.48 MGy dose

Classification:

DNA

Authors:

Bugris, V., Harmat, V., Ferenc, G., Brockhauser, S., Carmichael, I., Garman, E.F.

Citation:

Radiation-damage investigation of a DNA 16-mer.
J.Synchrotron Radiat. 26 pp.998 - 1009 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.219R free:0.255

NDB ID:

6QT2

PDB ID:

6QT2 

Release:

2019-07-17

Title:

Radiation damage study on a 16mer DNA segment, structure at 6.2 MGy dose

Classification:

DNA

Authors:

Bugris, V., Harmat, V., Ferenc, G., Brockhauser, S., Carmichael, I., Garman, E.F.

Citation:

Radiation-damage investigation of a DNA 16-mer.
J.Synchrotron Radiat. 26 pp.998 - 1009 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.219R free:0.281

NDB ID:

6QT3

PDB ID:

6QT3 

Release:

2019-07-17

Title:

Radiation damage study on a 16mer DNA segment, structure at 12.0 MGy dose

Classification:

DNA

Authors:

Bugris, V., Harmat, V., Ferenc, G., Brockhauser, S., Carmichael, I., Garman, E.F.

Citation:

Radiation-damage investigation of a DNA 16-mer.
J.Synchrotron Radiat. 26 pp.998 - 1009 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.222R free:0.291

NDB ID:

6QT4

PDB ID:

6QT4 

Release:

2019-07-17

Title:

Radiation damage study on a 16mer DNA segment, structure at 17.7 MGy dose

Classification:

DNA

Authors:

Bugris, V., Harmat, V., Ferenc, G., Brockhauser, S., Carmichael, I., Garman, E.F.

Citation:

Radiation-damage investigation of a DNA 16-mer.
J.Synchrotron Radiat. 26 pp.998 - 1009 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.231R free:0.31

NDB ID:

6QT5

PDB ID:

6QT5 

Release:

2019-07-17

Title:

Radiation damage study on a 16mer DNA segment, structure at 63.7 MGy dose

Classification:

DNA

Authors:

Bugris, V., Harmat, V., Ferenc, G., Brockhauser, S., Carmichael, I., Garman, E.F.

Citation:

Radiation-damage investigation of a DNA 16-mer.
J.Synchrotron Radiat. 26 pp.998 - 1009 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.247R free:0.344

NDB ID:

6QT6

PDB ID:

6QT6 

Release:

2019-07-17

Title:

Radiation damage study on a 16mer DNA segment, structure at 29.2 MGy dose

Classification:

DNA

Authors:

Bugris, V., Harmat, V., Ferenc, G., Brockhauser, S., Carmichael, I., Garman, E.F.

Citation:

Radiation-damage investigation of a DNA 16-mer.
J.Synchrotron Radiat. 26 pp.998 - 1009 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.27R free:0.369

NDB ID:

6FM4

PDB ID:

6FM4 

Release:

2019-07-10

Title:

The crystal structure of S. aureus Gyrase complex with ID-130 and DNA

Classification:

ISOMERASE

Authors:

Magaro', G., Prati, F., Garofalo, B., Corso, G., Furlotti, G., Apicella, C., Mangano, G., D'Atanasio, N., Robinson, D., Di Giorgio, F.P., Ombrato, R.

Citation:

Virtual Screening Approach and Investigation of Structure Activity Relationships to Discover Novel Bacterial Topoisomerase Inhibitors (NBTIs) Targeting Gram-Positive and Gram-Negative Pathogens.
J.Med.Chem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.224R free:0.299

NDB ID:

6GY3

PDB ID:

6GY3 

Release:

2019-07-10

Title:

Crystal Structure of C. glutamicum AmtR bound to glnA operator DNA

Classification:

TRANSCRIPTION

Authors:

Schwab, C., Sevvana, M., Seidel, G., Sandmann, A., Grau, F.C., Muller, Y.A.

Citation:

The role of DNA flexibility in transcription regulator AmtR-DNA interaction
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.68Å R work:0.208R free:0.25

NDB ID:

6JCE

PDB ID:

6JCE 

Release:

2019-07-10

Title:

NMR solution and X-ray crystal structures of a DNA containing both right-and left-handed parallel-stranded G-quadruplexes

Classification:

DNA

Authors:

Winnerdy, F.R., Bakalar, B., Maity, A., Vandana, J.J., Mechulam, Y., Schmitt, E., Phan, A.T.

Citation:

NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes.
Nucleic Acids Res. pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6KBS

PDB ID:

6KBS 

Release:

2019-07-10

Title:

Crystal structure of yedK in complex with ssDNA

Classification:

DNA BINDING PROTEIN

Authors:

Wang, N., Bao, H., Huang, H.

Citation:

Crystal structure of yedK in complex with ssDNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.601Å R work:0.172R free:0.2

NDB ID:

6KBX

PDB ID:

6KBX 

Release:

2019-07-10

Title:

Crystal structure of yedK in complex with ssDNA containing abasic site

Classification:

DNA BINDING PROTEIN

Authors:

Wang, N., Bao, H., Huang, H.

Citation:

Crystal structure of yedK in complex with ssDNA containing abasic site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.221Å R work:0.155R free:0.164

NDB ID:

6KBZ

PDB ID:

6KBZ 

Release:

2019-07-10

Title:

Crystal structure of yedK with ssDNA containing a tetrahydrofuran abasic site

Classification:

DNA BINDING PROTEIN

Authors:

Wang, N., Bao, H., Huang, H.

Citation:

Crystal structure of yedK
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.653Å R work:0.159R free:0.196

NDB ID:

6KCQ

PDB ID:

6KCQ 

Release:

2019-07-10

Title:

Crystal structure of yedK with ssDNA containing an abasic site

Classification:

DNA BINDING PROTEIN

Authors:

Wang, N., Bao, H., Huang, H.

Citation:

Crystal structure of yedK
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.701Å R work:0.16R free:0.203

NDB ID:

6OM3

PDB ID:

6OM3 

Release:

2019-07-10

Title:

Crystal structure of the Orc1 BAH domain in complex with a nucleosome core particle

Classification:

Structural Protein/DNA

Authors:

De Ioannes, P., Leon, V.A., Kuang, Z., Wang, M., Boeke, J.D., Hochwagen, A., Armache, K.J.

Citation:

Structure and function of the Orc1 BAH-nucleosome complex.
Nat Commun 10 pp.2894 - 2894 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.212R free:0.249

NDB ID:

6QFD

PDB ID:

6QFD 

Release:

2019-07-10

Title:

The complex structure of hsRosR-S4 (vng0258/RosR-S4)

Classification:

DNA BINDING PROTEIN

Authors:

Kutnowski, N., Shmulevich, F., Davidov, G., Shahar, A., Bar-zvi, D., Eichler, J., Zarivach, R., Shaanan, B.

Citation:

Specificity of protein-DNA interactions in hypersaline environment: Structural studies on complexes of Halobacterium salinarum oxidative stress dependent protein hsRosR
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.133Å R work:0.209R free:0.231

NDB ID:

6QH0

PDB ID:

6QH0 

Release:

2019-07-10

Title:

The complex structure of hsRosR-S5 (VNG0258H/RosR-S5)

Classification:

DNA BINDING PROTEIN

Authors:

Kutnowski, N., Shmulevich, F., Davidov, G., Shahar, A., Bar-zvi, D., Eichler, J., Zarivach, R., Shaanan, B.

Citation:

Specificity of protein-DNA interactions in hypersaline environment: Structural studies on complexes of Halobacterium salinarum oxidative stress dependent protein hsRosR
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.436Å R work:0.239R free:0.267

NDB ID:

6QIL

PDB ID:

6QIL 

Release:

2019-07-10

Title:

The complex structure of hsRosR-S1 (VNG0258H/RosR-S1)

Classification:

DNA BINDING PROTEIN

Authors:

Kutnowski, N., Shmulevich, F., Davidov, G., Shahar, A., Bar-zvi, D., Eichler, J., Zarivach, R., Shaanan, B.

Citation:

Specificity of protein-DNA interactions in hypersaline environment: Structural studies on complexes of Halobacterium salinarum oxidative stress dependent protein hsRosR
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.207R free:0.234

NDB ID:

6QUA

PDB ID:

6QUA 

Release:

2019-07-10

Title:

The complex structure of hsRosR-SG (vng0258/RosR-SG)

Classification:

DNA BINDING PROTEIN

Authors:

Kutnowski, N., Shmulevich, F., Davidov, G., Shahar, A., Bar-zvi, D., Eichler, J., Zarivach, R., Shaanan, B.

Citation:

Specificity of protein-DNA interactions in hypersaline environment: Structural studies on complexes of Halobacterium salinarum oxidative stress dependent protein hsRosR
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.681Å R work:0.238R free:0.289

NDB ID:

6RAR

PDB ID:

6RAR 

Release:

2019-07-10

Title:

Pmar-Lig_PreS3-Mn

Classification:

DNA BINDING PROTEIN

Authors:

Williamson, A., Leiros, H.K.S.

Citation:

Structure of a novel ATP-dependent DNA ligase from Prochlorococcus marinus
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.785Å R work:0.232R free:0.263

NDB ID:

6RAS

PDB ID:

6RAS 

Release:

2019-07-10

Title:

Pmar-Lig_Pre.

Classification:

DNA BINDING PROTEIN

Authors:

Williamson, A., Leiros, H.K.S.

Citation:

Structure of a novel ATP-dependent DNA ligase from Prochlorococcus marinus
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.187R free:0.241

NDB ID:

6RAU

PDB ID:

6RAU 

Release:

2019-07-10

Title:

PostS3_Pmar_lig4_WT

Classification:

DNA BINDING PROTEIN

Authors:

Williamson, A., Leiros, H.K.S.

Citation:

Structure of a novel ATP-dependent DNA ligase from Prochlorococcus marinus
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.99Å R work:0.193R free:0.23

NDB ID:

6RCE

PDB ID:

6RCE 

Release:

2019-07-10

Title:

Pmar-Lig_PreS3

Classification:

DNA BINDING PROTEIN

Authors:

Williamson, A., Leiros, H.K.S.

Citation:

Structure of a novel ATP-dependent DNA ligase from Prochlorococcus marinus
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.946Å R work:0.229R free:0.271

NDB ID:

6DVT

PDB ID:

6DVT 

Release:

2019-07-03

Title:

NMR structure for Sp1 transcription factor duplex 5'-d(GGGGCGGGA)

Classification:

DNA

Authors:

Davis, E.V., Hennig, M., Arya, D.P.

Citation:

An NMR Structure Determination and Analysis of Four Sp1 Consensus Sequences
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6DXM

PDB ID:

6DXM 

Release:

2019-07-03

Title:

NMR structure for Sp1 transcription factor duplex 5'-d(TGGGCGGGG)

Classification:

DNA

Authors:

Davis, E.V., Hennig, M., Arya, D.P.

Citation:

An NMR Structure Determination and Analysis of Four Sp1 Consensus Sequences
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6JG8

PDB ID:

6JG8 

Release:

2019-07-03

Title:

Crystal structure of AimR in complex with DNA

Classification:

PEPTIDE BINDING PROTEIN/DNA

Authors:

Guan, Z.Y., Pei, K., Wang, J., Cui, Y.Q., Zhu, X., Su, X., Zhou, Y.B., Zhang, D.L., Tang, C., Yin, P., Liu, Z., Zou, T.T.

Citation:

Structural insights into DNA recognition by AimR of the arbitrium communication system in the SPbeta phage.
Cell Discov 5 pp.29 - 29 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.097Å R work:0.21R free:0.221

NDB ID:

6ML2

PDB ID:

6ML2 

Release:

2019-07-03

Title:

ZBTB24 Zinc Fingers 4-8 with 19+1mer DNA Oligonucleotide (Sequence 1)

Classification:

TRANSCRIPTION/DNA

Authors:

Ren, R., Hardikar, S., Horton, J.R., Lu, Y., Zeng, Y., Singh, A.K., Lin, K., Coletta, L.D., Shen, J., Shuet, C., Kong, L., Hashimoto, H., Zhang, X., Chen, T., Cheng, X.

Citation:

Structural basis of specific DNA binding by the transcription factor ZBTB24
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.874Å R work:0.25R free:0.278

NDB ID:

6ML3

PDB ID:

6ML3 

Release:

2019-07-03

Title:

ZBTB24 Zinc Fingers 4-8 with 19+1mer DNA Oligonucleotide (Sequence 2)

Classification:

TRANSCRIPTION/DNA

Authors:

Ren, R., Hardikar, S., Horton, J.R., Lu, Y., Zeng, Y., Singh, A.K., Lin, K., Coletta, L.D., Shen, J., Shuet, C., Kong, L., Hashimoto, H., Zhang, X., Chen, T., Cheng, X.

Citation:

Structural basis of specific DNA binding by the transcription factor ZBTB24
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.683Å R work:0.224R free:0.256

NDB ID:

6ML4

PDB ID:

6ML4 

Release:

2019-07-03

Title:

BTB24 Zinc Fingers 4-8 with 19+1mer DNA Oligonucleotide (Sequence 3)

Classification:

TRANSCRIPTION/DNA

Authors:

Ren, R., Hardikar, S., Horton, J.R., Lu, Y., Zeng, Y., Singh, A.K., Lin, K., Coletta, L.D., Shen, J., Shuet, C., Kong, L., Hashimoto, H., Zhang, X., Chen, T., Cheng, X.

Citation:

Structural basis of specific DNA binding by the transcription factor ZBTB24
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.482Å R work:0.19R free:0.211

NDB ID:

6ML5

PDB ID:

6ML5 

Release:

2019-07-03

Title:

ZBTB24 Zinc Fingers 4-8 with 19+1mer DNA Oligonucleotide (Sequence 4)

Classification:

TRANSCRIPTION/DNA

Authors:

Ren, R., Hardikar, S., Horton, J.R., Lu, Y., Zeng, Y., Singh, A.K., Lin, K., Coletta, L.D., Shen, J., Shuet, C., Kong, L., Hashimoto, H., Zhang, X., Chen, T., Cheng, X.

Citation:

Structural basis of specific DNA binding by the transcription factor ZBTB24
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.225R free:0.244

NDB ID:

6ML6

PDB ID:

6ML6 

Release:

2019-07-03

Title:

ZBTB24 Zinc Fingers 4-8 with 19+1mer DNA Oligonucleotide (Sequence 4 with a CpA 5mC Modification)

Classification:

TRANSCRIPTION/DNA

Authors:

Ren, R., Hardikar, S., Horton, J.R., Lu, Y., Zeng, Y., Singh, A.K., Lin, K., Coletta, L.D., Shen, J., Shuet, C., Kong, L., Hashimoto, H., Zhang, X., Chen, T., Cheng, X.

Citation:

Structural basis of specific DNA binding by the transcription factor ZBTB24
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.54Å R work:0.201R free:0.221

NDB ID:

6ML7

PDB ID:

6ML7 

Release:

2019-07-03

Title:

ZBTB24 Zinc Fingers 4-8 with 19+1mer DNA Oligonucleotide (Sequence 4 with a CpG 5mC Modification)

Classification:

TRANSCRIPTION/DNA

Authors:

Ren, R., Hardikar, S., Horton, J.R., Lu, Y., Zeng, Y., Singh, A.K., Lin, K., Coletta, L.D., Shen, J., Shuet, C., Kong, L., Hashimoto, H., Zhang, X., Chen, T., Cheng, X.

Citation:

Structural basis of specific DNA binding by the transcription factor ZBTB24
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.192R free:0.239

NDB ID:

6QJO

PDB ID:

6QJO 

Release:

2019-07-03

Title:

DNA containing both right- and left-handed parallel-stranded G-quadruplexes

Classification:

DNA

Authors:

Winnerdy, F.R., Bakalar, B., Maity, A., Vandana, J.J., Mechulam, Y., Schmitt, E., Phan, A.T.

Citation:

NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.164R free:0.201

NDB ID:

6R9K

PDB ID:

6R9K 

Release:

2019-07-03

Title:

A quadruplex hybrid structure with lpp loop orientation and 3 syn residues

Classification:

DNA

Authors:

Karg, B., Mohr, S., Weisz, K.

Citation:

Duplex-Guided Refolding into Novel G-Quadruplex (3+1) Hybrid Conformations.
Angew.Chem.Int.Ed.Engl. pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6R9L

PDB ID:

6R9L 

Release:

2019-07-03

Title:

A quadruplex hybrid structure with lpp loop orientation and 5 syn residues

Classification:

DNA

Authors:

Karg, B., Mohr, S., Weisz, K.

Citation:

Duplex-Guided Refolding into Novel G-Quadruplex (3+1) Hybrid Conformations.
Angew.Chem.Int.Ed.Engl. pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6A57

PDB ID:

6A57 

Release:

2019-06-26

Title:

Structure of histone demethylase REF6 complexed with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Tian, Z., Chen, Z.

Citation:

Structure of histone demethylase REF6 complexed with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.221R free:0.256

NDB ID:

6NUA

PDB ID:

6NUA 

Release:

2019-06-26

Title:

DNA-protein crosslink between E. coli YedK and ssDNA containing an abasic site

Classification:

dna binding protein/dna

Authors:

Thompson, P.S., Amidon, K.M., Mohni, K.N., Cortez, D., Eichman, B.F.

Citation:

Protection of abasic sites during DNA replication by a stable thiazolidine protein-DNA cross-link.
Nat.Struct.Mol.Biol. 26 pp.613 - 618 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.64Å R work:0.17R free:0.221

NDB ID:

6NUH

PDB ID:

6NUH 

Release:

2019-06-26

Title:

DNA-protein crosslink between E. coli YedK and ssDNA containing an abasic site

Classification:

dna binding protein/dna

Authors:

Thompson, P.S., Amidon, K.M., Mohni, K.N., Cortez, D., Eichman, B.F.

Citation:

Protection of abasic sites during DNA replication by a stable thiazolidine protein-DNA cross-link.
Nat.Struct.Mol.Biol. 26 pp.613 - 618 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.594Å R work:0.143R free:0.177

NDB ID:

6P1A

PDB ID:

6P1A 

Release:

2019-06-26

Title:

Transcription antitermination factor Q21 in complex with Q21-binding-element DNA

Classification:

GENE REGULATION

Authors:

Yin, Z., Ebright, R.H.

Citation:

Structural basis of Q-dependent transcription antitermination
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.837Å R work:0.231R free:0.274

NDB ID:

6GLD

PDB ID:

6GLD 

Release:

2019-06-19

Title:

Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2

Classification:

DNA

Authors:

McQuaid, K., Hall, J.P., Allan, D., Cardin, D., Brazier, J.A., Cardin, C.J.

Citation:

Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.061Å R work:0.149R free:0.158

NDB ID:

6OY6

PDB ID:

6OY6 

Release:

2019-06-19

Title:

X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.096Å R work:0.211R free:0.264

NDB ID:

6P0S

PDB ID:

6P0S 

Release:

2019-06-19

Title:

Crystal structure of ternary DNA complex ""FX2"" containing E. coli Fis and phage lambda Xis

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hancock, S.P., Cascio, D., Johnson, R.C.

Citation:

Crystal structure of the Fis-Xis-DNA ternary complex on the native attR site, FX2
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.222R free:0.23

NDB ID:

6P0T

PDB ID:

6P0T 

Release:

2019-06-19

Title:

Crystal structure of ternary DNA complex ""FX(1-2)-1Xis"" containing E. coli Fis and phage lambda Xis

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hancock, S.P., Cascio, D., Johnson, R.C.

Citation:

Crystal structure of the Fis-Xis-DNA ternary complex on the non-native site, FX1-2
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.603Å R work:0.199R free:0.248

NDB ID:

6P0U

PDB ID:

6P0U 

Release:

2019-06-19

Title:

Crystal structure of ternary DNA complex "" FX(1-2)-2Xis"" containing E. coli Fis and phage lambda Xis

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hancock, S.P., Cascio, D., Johnson, R.C.

Citation:

Crystal structure of the Fis-Xis-DNA ternary complex on the non-native site, FX1-2
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.192R free:0.218

NDB ID:

6P70

PDB ID:

6P70 

Release:

2019-06-19

Title:

X-ray crystal structure of bacterial RNA polymerase and pyrBI promoter complex

Classification:

TRANSCRIPTION/DNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.052Å R work:0.207R free:0.251

NDB ID:

6QHD

PDB ID:

6QHD 

Release:

2019-06-19

Title:

Lysine acetylated and tyrosine phosphorylated STAT3 in a complex with DNA

Classification:

TRANSCRIPTION

Authors:

Belo, Y., Mielko, Z., Nudelman, H., Afek, A., Ben-David, O., Shahar, A., Zarivach, R., Gordan, R., Arbely, E.

Citation:

Unexpected implications of STAT3 acetylation revealed by genetic encoding of acetyl-lysine.
Biochim Biophys Acta Gen Subj 1863 pp.1343 - 1350 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.293R free:0.343

NDB ID:

6DM7

PDB ID:

6DM7 

Release:

2019-06-12

Title:

NMR structure for Sp1 transcription factor duplex 5'-d(GGGGCGGGG)

Classification:

DNA

Authors:

Davis, E.V., Hennig, M., Arya, D.P.

Citation:

An NMR Structure Determination and Analysis of Four Sp1 Consensus Sequences
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6I4N

PDB ID:

6I4N 

Release:

2019-06-12

Title:

Dodecamer DNA containing the synthetic base pair P-Z in complex with a pyrrole-imidazole polyamide

Classification:

DNA

Authors:

Padroni, G., Withers, J.M., Taladriz-Sender, A., Reichenbach, L.F., Parkinson, J.A., Burley, G.A.

Citation:

Sequence-Selective Minor Groove Recognition of a DNA Duplex Containing Synthetic Genetic Components.
J.Am.Chem.Soc. 141 pp.9555 - 9563 2019

Experiment:

SOLUTION NMR

NDB ID:

6I4O

PDB ID:

6I4O 

Release:

2019-06-12

Title:

Dodecamer DNA containing the synthetic base pair P-Z

Classification:

DNA

Authors:

Padroni, G., Withers, J.M., Taladriz-Sender, A., Reichenbach, L.F., Parkinson, J.A., Burley, G.A.

Citation:

Sequence-Selective Minor Groove Recognition of a DNA Duplex Containing Synthetic Genetic Components.
J.Am.Chem.Soc. 141 pp.9555 - 9563 2019

Experiment:

SOLUTION NMR

NDB ID:

6K3J

PDB ID:

6K3J 

Release:

2019-06-12

Title:

Solution structure of APOBEC3G-CD2 with ssDNA, Product A

Classification:

HYDROLASE/DNA

Authors:

Yan, X., Lan, W., Wang, C., Cao, C.

Citation:

Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA.
Chem Asian J 14 pp.2235 - 2241 2019

Experiment:

SOLUTION NMR

NDB ID:

6K3K

PDB ID:

6K3K 

Release:

2019-06-12

Title:

Solution structure of APOBEC3G-CD2 with ssDNA, Product B

Classification:

HYDROLASE/DNA

Authors:

Yan, X., Lan, W., Wang, C., Cao, C.

Citation:

Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA.
Chem Asian J 14 pp.2235 - 2241 2019

Experiment:

SOLUTION NMR